Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.17■□□□□ 0.66
SDC3O75056 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.17■□□□□ 0.66
SDC3O75056 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.17■□□□□ 0.66
SDC3O75056 DUX4L26-201ENST00000489078 1255 ntBASIC19.17■□□□□ 0.66
SDC3O75056 AP005242.2-201ENST00000580065 1175 ntBASIC19.17■□□□□ 0.66
SDC3O75056 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.17■□□□□ 0.66
SDC3O75056 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.16■□□□□ 0.66
SDC3O75056 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.16■□□□□ 0.66
SDC3O75056 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.16■□□□□ 0.66
SDC3O75056 INGX-201ENST00000359239 846 ntBASIC19.16■□□□□ 0.66
SDC3O75056 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SDC3O75056 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SDC3O75056 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SDC3O75056 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.16■□□□□ 0.66
SDC3O75056 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.16■□□□□ 0.66
SDC3O75056 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 AC011298.2-201ENST00000617989 482 ntBASIC19.16■□□□□ 0.66
SDC3O75056 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.16■□□□□ 0.66
SDC3O75056 HLA-A-209ENST00000638375 975 ntBASIC19.16■□□□□ 0.66
SDC3O75056 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.16■□□□□ 0.66
SDC3O75056 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.16■□□□□ 0.66
SDC3O75056 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC3O75056 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.16■□□□□ 0.66
SDC3O75056 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 RCC2P6-201ENST00000526625 1557 ntBASIC19.15■□□□□ 0.66
SDC3O75056 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SDC3O75056 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.15■□□□□ 0.66
SDC3O75056 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SDC3O75056 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.15■□□□□ 0.66
SDC3O75056 EGLN1P1-201ENST00000531623 762 ntBASIC19.15■□□□□ 0.66
SDC3O75056 NTF6B-201ENST00000591913 560 ntBASIC19.15■□□□□ 0.66
SDC3O75056 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SDC3O75056 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC3O75056 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
SDC3O75056 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
SDC3O75056 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SDC3O75056 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SDC3O75056 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SDC3O75056 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
SDC3O75056 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.14■□□□□ 0.66
SDC3O75056 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SDC3O75056 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SDC3O75056 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.14■□□□□ 0.66
SDC3O75056 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.14■□□□□ 0.65
SDC3O75056 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SDC3O75056 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SDC3O75056 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC3O75056 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.14■□□□□ 0.65
SDC3O75056 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SDC3O75056 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.14■□□□□ 0.65
SDC3O75056 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.14■□□□□ 0.65
SDC3O75056 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
SDC3O75056 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SDC3O75056 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.14■□□□□ 0.65
SDC3O75056 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SDC3O75056 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SDC3O75056 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC3O75056 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SDC3O75056 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.14■□□□□ 0.65
SDC3O75056 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SDC3O75056 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC3O75056 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SDC3O75056 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC3O75056 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.13■□□□□ 0.65
SDC3O75056 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SDC3O75056 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.13■□□□□ 0.65
SDC3O75056 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SDC3O75056 TSPY14P-201ENST00000303979 915 ntBASIC19.13■□□□□ 0.65
SDC3O75056 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC3O75056 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms