Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
NPHP1O15259 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC24.67■■□□□ 1.54
NPHP1O15259 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
NPHP1O15259 COPE-203ENST00000351079 907 ntTSL 2 BASIC24.67■■□□□ 1.54
NPHP1O15259 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
NPHP1O15259 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC24.67■■□□□ 1.54
NPHP1O15259 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC24.67■■□□□ 1.54
NPHP1O15259 AC022616.7-201ENST00000525383 220 ntBASIC24.67■■□□□ 1.54
NPHP1O15259 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
NPHP1O15259 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC24.67■■□□□ 1.54
NPHP1O15259 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
NPHP1O15259 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
NPHP1O15259 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP1O15259 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
NPHP1O15259 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP1O15259 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP1O15259 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP1O15259 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC24.66■■□□□ 1.54
NPHP1O15259 INGX-201ENST00000359239 846 ntBASIC24.66■■□□□ 1.54
NPHP1O15259 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP1O15259 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP1O15259 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP1O15259 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP1O15259 FAM87A-204ENST00000613235 858 ntBASIC24.66■■□□□ 1.54
NPHP1O15259 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
NPHP1O15259 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP1O15259 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP1O15259 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP1O15259 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
NPHP1O15259 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 AF106564.1-201ENST00000607058 2553 ntBASIC24.65■■□□□ 1.54
NPHP1O15259 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC24.65■■□□□ 1.54
NPHP1O15259 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 HMGA1P5-201ENST00000412453 271 ntBASIC24.65■■□□□ 1.54
NPHP1O15259 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 UPK3BP1-201ENST00000428678 509 ntBASIC24.65■■□□□ 1.54
NPHP1O15259 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC24.65■■□□□ 1.54
NPHP1O15259 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC24.65■■□□□ 1.54
NPHP1O15259 GPX4-207ENST00000589115 812 ntTSL 2 BASIC24.65■■□□□ 1.54
NPHP1O15259 AC116562.4-202ENST00000641738 218 ntBASIC24.65■■□□□ 1.54
NPHP1O15259 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC24.65■■□□□ 1.54
NPHP1O15259 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
NPHP1O15259 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP1O15259 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP1O15259 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP1O15259 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP1O15259 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP1O15259 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
NPHP1O15259 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP1O15259 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP1O15259 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
NPHP1O15259 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP1O15259 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP1O15259 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP1O15259 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC24.64■■□□□ 1.54
NPHP1O15259 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC24.64■■□□□ 1.54
NPHP1O15259 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC24.64■■□□□ 1.54
NPHP1O15259 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.54
NPHP1O15259 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC24.64■■□□□ 1.54
NPHP1O15259 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC24.64■■□□□ 1.54
NPHP1O15259 LTBR-211ENST00000543190 785 ntTSL 3 BASIC24.64■■□□□ 1.54
NPHP1O15259 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC24.64■■□□□ 1.54
NPHP1O15259 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC24.64■■□□□ 1.54
NPHP1O15259 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC24.64■■□□□ 1.54
NPHP1O15259 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC24.64■■□□□ 1.54
NPHP1O15259 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
NPHP1O15259 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
NPHP1O15259 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC24.64■■□□□ 1.53
NPHP1O15259 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC24.64■■□□□ 1.53
NPHP1O15259 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
NPHP1O15259 RCC2P6-201ENST00000526625 1557 ntBASIC24.63■■□□□ 1.53
NPHP1O15259 WWC2-AS2-201ENST00000578387 2183 ntBASIC24.63■■□□□ 1.53
NPHP1O15259 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC24.63■■□□□ 1.53
NPHP1O15259 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP1O15259 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP1O15259 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP1O15259 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC24.63■■□□□ 1.53
NPHP1O15259 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC24.63■■□□□ 1.53
NPHP1O15259 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP1O15259 AC004951.3-201ENST00000418645 1148 ntBASIC24.63■■□□□ 1.53
NPHP1O15259 MFAP1P1-201ENST00000442257 1255 ntBASIC24.63■■□□□ 1.53
NPHP1O15259 CCR12P-201ENST00000446203 998 ntBASIC24.63■■□□□ 1.53
NPHP1O15259 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC24.63■■□□□ 1.53
NPHP1O15259 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC24.63■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms