Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDX4O14627 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDX4O14627 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDX4O14627 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.96■□□□□ 0.63
CDX4O14627 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.96■□□□□ 0.63
CDX4O14627 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDX4O14627 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDX4O14627 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDX4O14627 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDX4O14627 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CDX4O14627 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.95■□□□□ 0.62
CDX4O14627 NPAP1P7-201ENST00000613027 823 ntBASIC18.95■□□□□ 0.62
CDX4O14627 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.95■□□□□ 0.62
CDX4O14627 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.95■□□□□ 0.62
CDX4O14627 TMEM179-206ENST00000616017 1645 ntBASIC18.95■□□□□ 0.62
CDX4O14627 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CDX4O14627 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDX4O14627 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX4O14627 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.94■□□□□ 0.62
CDX4O14627 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX4O14627 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX4O14627 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX4O14627 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.94■□□□□ 0.62
CDX4O14627 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.94■□□□□ 0.62
CDX4O14627 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.94■□□□□ 0.62
CDX4O14627 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX4O14627 STARP1-201ENST00000397973 869 ntBASIC18.94■□□□□ 0.62
CDX4O14627 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.94■□□□□ 0.62
CDX4O14627 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.94■□□□□ 0.62
CDX4O14627 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.94■□□□□ 0.62
CDX4O14627 RN7SL510P-201ENST00000581311 263 ntBASIC18.94■□□□□ 0.62
CDX4O14627 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.94■□□□□ 0.62
CDX4O14627 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX4O14627 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.94■□□□□ 0.62
CDX4O14627 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX4O14627 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX4O14627 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDX4O14627 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.93■□□□□ 0.62
CDX4O14627 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX4O14627 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC18.93■□□□□ 0.62
CDX4O14627 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX4O14627 LINC01311-201ENST00000565162 1445 ntBASIC18.93■□□□□ 0.62
CDX4O14627 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX4O14627 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX4O14627 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDX4O14627 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CDX4O14627 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX4O14627 PVRIG2P-201ENST00000435460 978 ntBASIC18.93■□□□□ 0.62
CDX4O14627 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX4O14627 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.93■□□□□ 0.62
CDX4O14627 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
CDX4O14627 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX4O14627 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDX4O14627 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.93■□□□□ 0.62
CDX4O14627 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDX4O14627 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX4O14627 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CDX4O14627 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX4O14627 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CDX4O14627 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.92■□□□□ 0.62
CDX4O14627 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CDX4O14627 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
CDX4O14627 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX4O14627 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
CDX4O14627 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX4O14627 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.92■□□□□ 0.62
CDX4O14627 AP000523.1-201ENST00000398242 1049 ntBASIC18.92■□□□□ 0.62
CDX4O14627 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.92■□□□□ 0.62
CDX4O14627 AP000347.1-202ENST00000435868 847 ntBASIC18.92■□□□□ 0.62
CDX4O14627 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.92■□□□□ 0.62
CDX4O14627 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.92■□□□□ 0.62
CDX4O14627 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
CDX4O14627 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX4O14627 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.92■□□□□ 0.62
CDX4O14627 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.92■□□□□ 0.62
CDX4O14627 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX4O14627 KRT8P8-201ENST00000434750 1448 ntBASIC18.91■□□□□ 0.62
CDX4O14627 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.91■□□□□ 0.62
CDX4O14627 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.91■□□□□ 0.62
CDX4O14627 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CDX4O14627 FP700111.2-201ENST00000619190 1892 ntBASIC18.91■□□□□ 0.62
CDX4O14627 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.91■□□□□ 0.62
CDX4O14627 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDX4O14627 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CDX4O14627 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms