Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 AL359075.1-203ENST00000462729 1002 ntBASIC34.13■■■■□ 3.05
CCDC88BA6NC98 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 DBP-204ENST00000599385 709 ntTSL 3 BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC34.13■■■■□ 3.05
CCDC88BA6NC98 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC34.13■■■■□ 3.05
CCDC88BA6NC98 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
CCDC88BA6NC98 LINC01465-201ENST00000408887 1940 ntBASIC34.12■■■■□ 3.05
CCDC88BA6NC98 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
CCDC88BA6NC98 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC34.12■■■■□ 3.05
CCDC88BA6NC98 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
CCDC88BA6NC98 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC34.12■■■■□ 3.05
CCDC88BA6NC98 DUSP5P1-201ENST00000441325 1139 ntBASIC34.12■■■■□ 3.05
CCDC88BA6NC98 AL160286.2-201ENST00000567150 934 ntBASIC34.12■■■■□ 3.05
CCDC88BA6NC98 AL023973.1-201ENST00000624619 620 ntBASIC34.12■■■■□ 3.05
CCDC88BA6NC98 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC34.11■■■■□ 3.05
CCDC88BA6NC98 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
CCDC88BA6NC98 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC34.11■■■■□ 3.05
CCDC88BA6NC98 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC34.11■■■■□ 3.05
CCDC88BA6NC98 PCED1CP-201ENST00000419887 785 ntBASIC34.11■■■■□ 3.05
CCDC88BA6NC98 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
CCDC88BA6NC98 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC34.11■■■■□ 3.05
CCDC88BA6NC98 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
CCDC88BA6NC98 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC34.11■■■■□ 3.05
CCDC88BA6NC98 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 FEM1AP1-201ENST00000431297 1995 ntBASIC34.1■■■■□ 3.05
CCDC88BA6NC98 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 NME1-207ENST00000480143 964 ntTSL 2 BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 AP003041.3-201ENST00000527151 707 ntBASIC34.1■■■■□ 3.05
CCDC88BA6NC98 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 CD320-202ENST00000537716 1119 ntTSL 2 BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC34.1■■■■□ 3.05
CCDC88BA6NC98 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 AC092647.4-201ENST00000457211 535 ntBASIC34.09■■■■□ 3.05
CCDC88BA6NC98 KRT18P56-201ENST00000507275 550 ntBASIC34.09■■■■□ 3.05
CCDC88BA6NC98 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 CKBP1-201ENST00000565489 1086 ntBASIC34.09■■■■□ 3.05
CCDC88BA6NC98 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 AC116407.4-201ENST00000623319 1061 ntBASIC34.09■■■■□ 3.05
CCDC88BA6NC98 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC34.09■■■■□ 3.05
CCDC88BA6NC98 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC34.08■■■■□ 3.05
CCDC88BA6NC98 AC083849.1-201ENST00000615227 514 ntBASIC34.08■■■■□ 3.05
CCDC88BA6NC98 MOK-225ENST00000522867 1883 ntTSL 5 BASIC34.08■■■■□ 3.05
CCDC88BA6NC98 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC34.08■■■■□ 3.05
CCDC88BA6NC98 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC34.08■■■■□ 3.05
CCDC88BA6NC98 AC005332.1-201ENST00000577698 1310 ntBASIC34.08■■■■□ 3.05
CCDC88BA6NC98 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC34.08■■■■□ 3.05
CCDC88BA6NC98 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
CCDC88BA6NC98 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC34.08■■■■□ 3.05
CCDC88BA6NC98 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC34.07■■■■□ 3.05
CCDC88BA6NC98 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC34.07■■■■□ 3.05
CCDC88BA6NC98 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC34.07■■■■□ 3.05
CCDC88BA6NC98 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC34.07■■■■□ 3.05
CCDC88BA6NC98 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC34.07■■■■□ 3.04
CCDC88BA6NC98 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
CCDC88BA6NC98 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
CCDC88BA6NC98 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC34.06■■■■□ 3.04
CCDC88BA6NC98 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC34.06■■■■□ 3.04
CCDC88BA6NC98 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC34.06■■■■□ 3.04
CCDC88BA6NC98 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC34.06■■■■□ 3.04
CCDC88BA6NC98 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC34.06■■■■□ 3.04
CCDC88BA6NC98 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC34.06■■■■□ 3.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms