Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC093297.3-201ENST00000607056 2517 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 DPPA2P3-201ENST00000411853 655 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC005033.1-201ENST00000428904 813 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 CLUHP1-201ENST00000435012 1190 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 EEF1B2P5-201ENST00000444820 548 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AL389915.2-201ENST00000454576 441 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC108161.1-201ENST00000461060 402 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 BX284632.1-201ENST00000478218 541 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 RN7SL814P-201ENST00000487715 300 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC006427.1-201ENST00000514359 712 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC022360.1-201ENST00000521058 340 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC134349.2-201ENST00000535136 910 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC024940.3-201ENST00000538551 316 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC023389.2-201ENST00000580031 955 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC009597.2-201ENST00000604659 592 ntBASIC5.32□□□□□ -1.56
LHX3Q9UBR4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.32□□□□□ -1.56
LHX3Q9UBR4 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC109780.1-201ENST00000451768 1344 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RNA5SP90-201ENST00000364801 99 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 MIR589-201ENST00000385238 99 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RN7SKP278-201ENST00000410504 342 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 GPS2P1-201ENST00000411761 986 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AL356968.2-201ENST00000412769 1257 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RPS4XP16-201ENST00000427198 791 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RPL19P16-201ENST00000433839 588 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 NPM1P19-201ENST00000450070 712 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 FCF1P7-201ENST00000451185 558 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC009127.1-201ENST00000467090 155 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RN7SL214P-201ENST00000487317 265 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC092709.1-201ENST00000521355 1045 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AP000919.1-201ENST00000582850 985 ntBASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC5.31□□□□□ -1.56
LHX3Q9UBR4 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms