Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RPL7P41-201ENST00000485823 957 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 NIFKP7-201ENST00000503365 834 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 AC138409.2-202ENST00000507274 458 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 MTND6P2-201ENST00000512226 524 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 HSD3BP3-201ENST00000514706 994 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 RNA5SP303-201ENST00000516192 130 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 RNU6-964P-201ENST00000516524 69 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 CYCSP38-201ENST00000559840 322 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 AC233280.2-201ENST00000603917 1070 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 AL353600.1-201ENST00000608148 251 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 NF1P10-201ENST00000613227 742 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 OR8G3P-202ENST00000641572 1255 ntBASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC28BQ9BUN5 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 UGT2B26P-201ENST00000508672 1613 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 TTC39DP-201ENST00000416781 1688 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC126323.6-202ENST00000568092 3511 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 RNA5SP477-201ENST00000362639 119 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 GAPDHP42-201ENST00000406848 981 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 RPS3AP2-201ENST00000407190 754 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 CASKP1-201ENST00000412870 582 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 KF459542.1-201ENST00000450908 553 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 VDAC2P4-201ENST00000452925 711 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AP000547.1-201ENST00000454360 617 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 CYCSP34-201ENST00000458172 304 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC112206.1-201ENST00000468416 477 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC020779.1-201ENST00000478757 796 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC021733.2-201ENST00000518830 497 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC022882.1-201ENST00000532142 501 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC079905.1-201ENST00000549280 475 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC010615.3-201ENST00000597319 394 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC005828.7-201ENST00000607331 556 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 OR7M1P-201ENST00000608946 533 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 MIR8069-1-201ENST00000616627 86 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 MIR8069-2-201ENST00000621412 86 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC087565.3-203ENST00000641018 837 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 AC023421.1-201ENST00000590535 1785 ntBASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC28BQ9BUN5 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 AC011503.2-201ENST00000594230 1500 ntBASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 AC005294.1-201ENST00000355509 281 ntBASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 RNU2-18P-201ENST00000411224 162 ntBASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 AC127526.2-201ENST00000426436 775 ntBASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 AL512637.1-201ENST00000439523 1231 ntBASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 NOP56P2-201ENST00000447491 769 ntBASIC5.18□□□□□ -1.58
CCDC28BQ9BUN5 BX842559.2-201ENST00000451418 605 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms