Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS13AQ96RL7 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 AC067852.5-201ENST00000589299 310 ntBASIC4.9□□□□□ -1.62
VPS13AQ96RL7 AC243756.2-201ENST00000618406 463 ntBASIC4.9□□□□□ -1.62
VPS13AQ96RL7 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 ALB-220ENST00000621628 1606 ntTSL 5 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS13AQ96RL7 TCP11X1-202ENST00000622971 1372 ntBASIC4.9□□□□□ -1.62
VPS13AQ96RL7 AC105342.1-201ENST00000378334 6848 ntBASIC4.9□□□□□ -1.62
VPS13AQ96RL7 SNORA66-201ENST00000384792 133 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 RPL34P27-201ENST00000428810 349 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 snoU13.24-201ENST00000458998 104 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 RPL23AP2-201ENST00000471227 466 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 OR8A2P-201ENST00000528631 952 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 ARF4P1-201ENST00000605447 541 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 AC244107.2-201ENST00000611773 76 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 UBA3-213ENST00000631029 123 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 AL359195.2-201ENST00000623657 4412 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 SDAD1P1-202ENST00000524156 2051 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 RNU6-525P-201ENST00000363685 104 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 OR1L6-202ENST00000373684 1044 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 HMGB1P4-201ENST00000455362 567 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 ZYXP1-201ENST00000617638 118 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 AC006210.2-201ENST00000367074 1545 ntBASIC4.9□□□□□ -1.63
VPS13AQ96RL7 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS13AQ96RL7 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AP005432.1-201ENST00000580891 3485 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AC119674.1-213ENST00000641177 1386 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AC120338.1-201ENST00000625074 1541 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 ATP5F1P2-201ENST00000398143 760 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AC124944.2-201ENST00000429866 1242 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 RPS12P31-201ENST00000491419 398 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AC093827.1-201ENST00000480094 861 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AC104971.1-201ENST00000495117 578 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 RN7SKP260-201ENST00000516907 149 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 OR4A2P-201ENST00000527276 913 ntBASIC4.89□□□□□ -1.63
VPS13AQ96RL7 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 NCKAP5-201ENST00000317721 7593 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 NCKAP5-205ENST00000409261 7594 ntAPPRIS P4 TSL 5 BASIC4.89□□□□□ -1.63
VPS13AQ96RL7 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 NCLP2-201ENST00000416078 1462 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 RNA5SP428-201ENST00000365129 132 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 RPS3AP54-201ENST00000435535 734 ntBASIC4.88□□□□□ -1.63
VPS13AQ96RL7 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.88□□□□□ -1.63
VPS13AQ96RL7 CT45A11P-201ENST00000448043 1134 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms