Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MIR551B-201ENST00000384984 96 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 U3.28-201ENST00000391249 210 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 RN7SKP296-201ENST00000411185 341 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 VTA1P1-201ENST00000414044 866 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 MTCO1P3-201ENST00000429327 192 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 MRPS10P2-201ENST00000431226 381 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 USP9YP31-201ENST00000431405 881 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC245452.2-201ENST00000435222 392 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AL356121.1-201ENST00000442911 156 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 COX6CP2-201ENST00000444980 225 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC005002.1-201ENST00000447458 540 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 CALM1P2-201ENST00000452941 448 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 CFTRP1-201ENST00000456646 183 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 HSPE1P22-201ENST00000456856 327 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AKR1D1P1-201ENST00000457236 936 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AP003385.3-201ENST00000472498 287 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 NCOR1P1-202ENST00000486162 291 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 CDH12P2-201ENST00000504393 298 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC010285.3-201ENST00000511668 676 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 RN7SKP98-201ENST00000517070 156 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 CASP1-216ENST00000534497 825 ntTSL 5 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 YWHABP2-201ENST00000540201 713 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC092375.1-201ENST00000550410 637 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC087481.2-201ENST00000565492 330 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC004232.1-201ENST00000571388 208 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 ROCK1P1-201ENST00000573767 549 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC091133.5-201ENST00000603088 301 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC012175.1-201ENST00000603755 531 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AL390877.1-201ENST00000605704 214 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC019131.2-201ENST00000609071 870 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 AC124312.6-202ENST00000623624 418 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 BANCR-201ENST00000624238 473 ntTSL 2 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 NAMPTP1-201ENST00000440465 2514 ntBASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
PTCHD1Q96NR3 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 FANCD2P2-201ENST00000437591 1400 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 RN7SKP184-201ENST00000362348 333 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 SNORA38B-201ENST00000363524 131 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 RNA5SP140-201ENST00000364524 92 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 Y_RNA.359-201ENST00000365498 102 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 OR1L1-202ENST00000373686 1083 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 SNORD94-201ENST00000386037 137 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 NRBF2P2-201ENST00000413087 861 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 CDK8P2-201ENST00000415020 547 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 AK4P4-201ENST00000419465 646 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 AL589794.1-201ENST00000424971 390 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 HSPE1P16-201ENST00000426640 348 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 NANOGP4-201ENST00000427230 913 ntBASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.28□□□□□ -1.4
PTCHD1Q96NR3 RN7SL83P-201ENST00000468131 297 ntBASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms