Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LIMCH1-219ENST00000514096 3543 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 RABEP1-201ENST00000341923 2490 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 OR2M1P-201ENST00000318104 951 ntBASIC6.98□□□□□ -1.29
MSX1P28360 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 RNA5SP79-201ENST00000365193 109 ntBASIC6.98□□□□□ -1.29
MSX1P28360 RNU6-463P-201ENST00000384340 107 ntBASIC6.98□□□□□ -1.29
MSX1P28360 TRAV8-3-201ENST00000390435 341 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
MSX1P28360 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
MSX1P28360 AL589647.1-201ENST00000402485 466 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AL354719.1-201ENST00000406535 843 ntBASIC6.98□□□□□ -1.29
MSX1P28360 Y_RNA.608-201ENST00000410647 95 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AC083875.1-201ENST00000419509 405 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 GAPDHP73-201ENST00000423411 1007 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AL138479.1-201ENST00000426913 484 ntBASIC6.98□□□□□ -1.29
MSX1P28360 GTF2IP20-201ENST00000431663 360 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 RPL35P8-201ENST00000433284 337 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC6.98□□□□□ -1.29
MSX1P28360 RPL7P29-201ENST00000437151 728 ntBASIC6.98□□□□□ -1.29
MSX1P28360 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC6.98□□□□□ -1.29
MSX1P28360 BX679664.2-201ENST00000439282 283 ntBASIC6.98□□□□□ -1.29
MSX1P28360 RPL7L1P11-201ENST00000446092 721 ntBASIC6.98□□□□□ -1.29
MSX1P28360 BX842559.2-201ENST00000451418 605 ntBASIC6.98□□□□□ -1.29
MSX1P28360 RPL18AP17-201ENST00000455326 198 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 RPS18P13-201ENST00000461260 454 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 RN7SL145P-201ENST00000469955 296 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.98□□□□□ -1.29
MSX1P28360 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.98□□□□□ -1.29
MSX1P28360 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC6.98□□□□□ -1.29
MSX1P28360 RN7SKP242-201ENST00000515967 289 ntBASIC6.98□□□□□ -1.29
MSX1P28360 RNU6-1334P-201ENST00000516032 105 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AP003032.1-201ENST00000526730 277 ntTSL 3 BASIC6.98□□□□□ -1.29
MSX1P28360 HHLA3-207ENST00000531950 541 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC6.98□□□□□ -1.29
MSX1P28360 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.98□□□□□ -1.29
MSX1P28360 MIR5192-201ENST00000579892 92 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AC005884.1-201ENST00000588604 429 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC6.98□□□□□ -1.29
MSX1P28360 AP001521.2-201ENST00000608772 546 ntBASIC6.98□□□□□ -1.29
MSX1P28360 BX005040.2-201ENST00000620504 370 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AL451054.1-201ENST00000621770 772 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AL683826.1-201ENST00000624104 627 ntBASIC6.98□□□□□ -1.29
MSX1P28360 BANCR-201ENST00000624238 473 ntTSL 2 BASIC6.98□□□□□ -1.29
MSX1P28360 AC134503.1-201ENST00000633048 54 ntBASIC6.98□□□□□ -1.29
MSX1P28360 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 AC016930.1-201ENST00000468766 2205 ntBASIC6.98□□□□□ -1.29
MSX1P28360 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 AC116366.1-201ENST00000443093 3730 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 UBE2V1-202ENST00000371657 1973 ntTSL 4 BASIC6.98□□□□□ -1.29
MSX1P28360 DMD-211ENST00000378707 7410 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 REG1CP-205ENST00000444841 1710 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 MTND5P16-201ENST00000460269 1703 ntBASIC6.98□□□□□ -1.29
MSX1P28360 PEX19-201ENST00000368072 3661 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 ALG13-201ENST00000251943 3997 ntTSL 2 BASIC6.98□□□□□ -1.29
MSX1P28360 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC6.98□□□□□ -1.29
MSX1P28360 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC6.98□□□□□ -1.29
MSX1P28360 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC6.98□□□□□ -1.29
MSX1P28360 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 AP003175.1-201ENST00000641383 6658 ntBASIC6.98□□□□□ -1.29
MSX1P28360 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 AC090771.1-201ENST00000585803 1618 ntBASIC6.98□□□□□ -1.29
MSX1P28360 ATP5A1P10-201ENST00000622403 1603 ntBASIC6.98□□□□□ -1.29
MSX1P28360 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.98□□□□□ -1.29
MSX1P28360 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC6.97□□□□□ -1.29
MSX1P28360 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 AC016747.1-201ENST00000420918 2532 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 SUPT7L-205ENST00000464789 2664 ntAPPRIS ALT1 TSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 MFSD8-218ENST00000641186 4448 ntBASIC6.97□□□□□ -1.29
MSX1P28360 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
MSX1P28360 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 AC026464.2-201ENST00000567834 2421 ntBASIC6.97□□□□□ -1.29
MSX1P28360 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC6.97□□□□□ -1.29
MSX1P28360 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 DEFA6-201ENST00000297436 469 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSX1P28360 OR4A15-201ENST00000314706 1035 ntBASIC6.97□□□□□ -1.29
MSX1P28360 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
MSX1P28360 OR52B1P-201ENST00000316506 909 ntBASIC6.97□□□□□ -1.29
MSX1P28360 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
MSX1P28360 RNU6-451P-201ENST00000362921 107 ntBASIC6.97□□□□□ -1.29
MSX1P28360 U8.3-201ENST00000363321 132 ntBASIC6.97□□□□□ -1.29
MSX1P28360 Y_RNA.157-201ENST00000363638 102 ntBASIC6.97□□□□□ -1.29
MSX1P28360 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms