Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC073525.1-203ENST00000547040 2631 ntTSL 2 BASIC8.07□□□□□ -1.12
VPS9D1Q9Y2B5 EHF-201ENST00000257831 3150 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
VPS9D1Q9Y2B5 GULP1-203ENST00000409609 1932 ntAPPRIS P3 TSL 2 BASIC8.07□□□□□ -1.12
VPS9D1Q9Y2B5 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
VPS9D1Q9Y2B5 EEF1A1P5-201ENST00000436459 1389 ntBASIC8.07□□□□□ -1.12
VPS9D1Q9Y2B5 AL353763.2-201ENST00000623489 1903 ntBASIC8.07□□□□□ -1.12
VPS9D1Q9Y2B5 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
VPS9D1Q9Y2B5 DHX8-202ENST00000540306 3809 ntTSL 2 BASIC8.07□□□□□ -1.12
VPS9D1Q9Y2B5 AC022150.4-201ENST00000598322 2848 ntBASIC8.07□□□□□ -1.12
VPS9D1Q9Y2B5 API5P2-201ENST00000397055 1498 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 C10orf25-201ENST00000625168 3078 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 SELENOT-202ENST00000471696 3469 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 DCAF4L2-201ENST00000319675 3326 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 GANC-206ENST00000566442 2512 ntTSL 2 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 NLRP3-203ENST00000366496 3996 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 SSXP3-201ENST00000442971 1300 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 LPAR6-202ENST00000378434 3004 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 CLRN1-AS1-202ENST00000476886 2223 ntTSL 2 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 ZNF438-202ENST00000361310 3144 ntAPPRIS P3 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 TCF4-203ENST00000398339 2551 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 ADH6-203ENST00000394899 2802 ntAPPRIS ALT1 TSL 2 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AKAP3-206ENST00000545990 3318 ntAPPRIS P1 TSL 2 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AL512646.1-201ENST00000269395 1077 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 SNORD50B-201ENST00000364995 70 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 CST11-201ENST00000377007 461 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 Y_RNA.396-201ENST00000383949 103 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 MIR1305-201ENST00000408300 86 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 RN7SKP158-201ENST00000410453 326 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AC080125.1-201ENST00000414888 684 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 UQCRHP2-201ENST00000415651 288 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 PIGPP3-201ENST00000425307 415 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AP000317.1-201ENST00000427022 805 ntTSL 3 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 OR51R1P-201ENST00000435309 952 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AL353093.1-201ENST00000441292 436 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AL445686.1-201ENST00000443086 348 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 SAP18P3-201ENST00000449663 396 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AL356310.1-201ENST00000452024 585 ntTSL 3 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 TAAR3P-201ENST00000466706 1078 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 RPL12P5-201ENST00000475149 392 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 TAAR3P-202ENST00000481759 1025 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AC108688.1-201ENST00000485817 713 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 RPL32P3-203ENST00000506593 498 ntTSL 5 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 Y_RNA.680-201ENST00000516441 93 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 NACA2-201ENST00000521764 777 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AC026464.1-202ENST00000564737 722 ntAPPRIS P5 TSL 5 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AC006441.3-201ENST00000580121 456 ntTSL 4 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 ZNF286A-214ENST00000581529 560 ntTSL 4 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 BNIP3P16-201ENST00000589779 534 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 HIGD1B-205ENST00000591513 547 ntAPPRIS P1 TSL 2 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 XIST-210ENST00000602863 775 ntTSL 3 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AL683813.2-201ENST00000605245 502 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AC104184.1-201ENST00000607513 721 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 AC006238.1-201ENST00000609787 534 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 VEZF1P1-201ENST00000423931 1541 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 RBBP5-201ENST00000264515 4404 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 MAPK10-343ENST00000641677 2546 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 BCL9P1-201ENST00000506012 2561 ntBASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 FBXO38-201ENST00000296701 3680 ntTSL 2 BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
VPS9D1Q9Y2B5 CDC25C-203ENST00000415130 1556 ntTSL 5 BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 MAGT1-205ENST00000618282 2788 ntAPPRIS ALT1 TSL 1 (best) BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 CLCN3P1-202ENST00000609203 1944 ntTSL 2 BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 NLRP9-201ENST00000332836 3484 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 USP32P1-202ENST00000393005 3846 ntTSL 5 BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 NAA11-201ENST00000286794 2014 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 MAP4-210ENST00000439356 2743 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 MACROD2-202ENST00000378058 4025 ntTSL 2 BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 ERCC6-202ENST00000374127 1782 ntBASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 THNSL1-202ENST00000524413 3788 ntAPPRIS P1 TSL 3 BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 STC1-201ENST00000290271 3883 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 PAICS-202ENST00000399688 3297 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
VPS9D1Q9Y2B5 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms