Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 KIT-201ENST00000288135 5186 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.15
LIMD1Q9UGP4 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.15
LIMD1Q9UGP4 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
LIMD1Q9UGP4 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
LIMD1Q9UGP4 HSP90AB2P-201ENST00000507090 2176 ntBASIC7.9□□□□□ -1.15
LIMD1Q9UGP4 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
LIMD1Q9UGP4 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7.9□□□□□ -1.15
LIMD1Q9UGP4 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 APBB2-224ENST00000513140 4166 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 ASNSP1-204ENST00000641977 1664 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC079178.2-201ENST00000439323 1624 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 ETS1-204ENST00000526145 3389 ntTSL 5 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC127502.2-201ENST00000602663 2351 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 CCDC77-203ENST00000422000 2338 ntAPPRIS ALT2 TSL 5 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 C14orf37-201ENST00000267485 6495 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 RNU12-2P-201ENST00000364789 156 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 SNORD115.1-201ENST00000391109 76 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 RANP6-201ENST00000413691 644 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL590682.1-201ENST00000437248 344 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 HMGB3P12-201ENST00000438745 556 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 TXNP5-201ENST00000441043 315 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL157414.2-201ENST00000442780 377 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 YWHAQP9-201ENST00000445891 512 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 RN7SL388P-201ENST00000498736 339 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 DKK2-204ENST00000513208 925 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 HIGD1AP6-201ENST00000521833 279 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC131935.1-201ENST00000524621 333 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AP003072.1-201ENST00000531740 145 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL121594.2-201ENST00000541658 472 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC024257.1-201ENST00000547523 566 ntTSL 4 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC079313.2-202ENST00000552053 511 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 SPATS2-222ENST00000552918 2993 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 NMNAT1P1-201ENST00000554095 876 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC007424.1-203ENST00000554613 687 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 CYP4A44P-201ENST00000569984 154 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 MIR3671-201ENST00000580455 88 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC022916.3-201ENST00000592961 742 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC090948.2-201ENST00000607363 564 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 MIR6780B-201ENST00000610307 79 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 Six3os1_2.1-201ENST00000616963 217 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 Metazoa_SRP.27-201ENST00000617573 258 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC002550.2-201ENST00000621246 394 ntBASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 SLC22A10-201ENST00000332793 2026 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL133467.3-203ENST00000461160 3574 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 ZNF200-203ENST00000396871 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 EFHC1-233ENST00000637353 3829 ntTSL 5 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 CCDC66-203ENST00000394672 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 ZNF10-201ENST00000248211 4441 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
LIMD1Q9UGP4 AL353052.2-201ENST00000441459 2241 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 ABCB4-202ENST00000358400 3826 ntTSL 5 BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 INO80C-212ENST00000592173 3245 ntTSL 2 BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 GC-201ENST00000273951 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 AL357556.1-201ENST00000421884 1388 ntBASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 SYF2-202ENST00000354361 926 ntTSL 2 BASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 RNU6-845P-201ENST00000362578 103 ntBASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 U8.3-201ENST00000363321 132 ntBASIC7.88□□□□□ -1.15
LIMD1Q9UGP4 RNU6-115P-201ENST00000364310 107 ntBASIC7.88□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms