Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC067959.1-201ENST00000604334 379 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 MLECP1-201ENST00000615893 709 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 AC010329.1-201ENST00000593903 8328 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 MFSD8-220ENST00000641243 1422 ntBASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
SHANK3Q9BYB0 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 AL451142.1-201ENST00000375867 775 ntBASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 RNA5SP171-201ENST00000391071 115 ntBASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 AL359265.2-201ENST00000434367 631 ntBASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 BX679664.2-201ENST00000439282 283 ntBASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 AL359073.1-201ENST00000448036 403 ntBASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 HMGN1P9-201ENST00000515212 298 ntBASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 AL139041.1-201ENST00000605480 610 ntBASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 AL356608.1-201ENST00000610034 820 ntBASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 ZNF652P1-201ENST00000442420 1309 ntBASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 USP8-204ENST00000425032 3559 ntTSL 2 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC6.66□□□□□ -1.34
SHANK3Q9BYB0 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 TTC3P1-201ENST00000399586 6081 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 U3.30-201ENST00000391308 210 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 RN7SKP114-201ENST00000410327 279 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 RPS27AP7-201ENST00000422792 455 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 TCEA1P1-201ENST00000449716 880 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 OR52J1P-201ENST00000450596 932 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 AC025674.1-201ENST00000507074 324 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 AC091932.2-201ENST00000623014 291 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 AC069542.2-201ENST00000624816 216 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 MIR6830-201ENST00000636015 70 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 AC104964.3-201ENST00000606115 2860 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 AL122126.1-201ENST00000546905 1318 ntBASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
SHANK3Q9BYB0 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SHANK3Q9BYB0 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.65□□□□□ -1.35
SHANK3Q9BYB0 Z98755.1-201ENST00000407015 1384 ntBASIC6.65□□□□□ -1.35
SHANK3Q9BYB0 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SHANK3Q9BYB0 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
SHANK3Q9BYB0 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.65□□□□□ -1.35
SHANK3Q9BYB0 DHX40P1-201ENST00000588725 1412 ntBASIC6.65□□□□□ -1.35
SHANK3Q9BYB0 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC6.65□□□□□ -1.35
SHANK3Q9BYB0 AL590240.1-201ENST00000334118 313 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 RN7SKP185-201ENST00000362813 326 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 HSPD1P12-201ENST00000429127 1069 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AC010733.1-201ENST00000451515 401 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 RPS17P2-201ENST00000461663 408 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 CR383656.1-201ENST00000484916 377 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 IGKV2-23-201ENST00000518729 323 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 AC011626.1-201ENST00000604710 562 ntBASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SHANK3Q9BYB0 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms