Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC068724.3-201ENST00000625906 87 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AC073869.8-201ENST00000641806 335 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 MAPK10-304ENST00000641341 3984 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AL078599.1-201ENST00000402075 293 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AP002530.1-201ENST00000405705 684 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 RN7SKP27-201ENST00000410684 333 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 CHIAP3-201ENST00000423668 1133 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AC091042.1-201ENST00000579213 173 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 AC011453.2-201ENST00000603737 729 ntBASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
CCDC88AQ3V6T2 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 AL355488.2-201ENST00000609909 2850 ntBASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 AC119751.6-201ENST00000416712 186 ntBASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 AC093824.1-201ENST00000508796 343 ntBASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 RN7SKP21-201ENST00000516503 220 ntBASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC88AQ3V6T2 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC104634.1-201ENST00000452720 462 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC007537.2-201ENST00000472093 511 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AP005432.2-201ENST00000608162 586 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC100757.1-201ENST00000616872 1835 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 DHX40P1-201ENST00000588725 1412 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 SNORA57.1-201ENST00000391227 145 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 PPIAP9-201ENST00000403866 498 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC239367.2-201ENST00000447309 705 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 CYCSP42-201ENST00000450823 238 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC063943.1-201ENST00000465434 453 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC091912.1-201ENST00000511351 248 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 TOMM20P2-201ENST00000540082 421 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 YWHABP2-201ENST00000540201 713 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 MIR4737-201ENST00000583979 81 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC005252.1-201ENST00000604518 1063 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 AC244107.2-201ENST00000611773 76 ntBASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC88AQ3V6T2 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 AC144833.1-201ENST00000567953 4089 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 AL031123.3-201ENST00000623345 1837 ntBASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms