Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.03□□□□□ -1.6
LIM2P55344 OR55B1P-203ENST00000641518 2602 ntBASIC5.03□□□□□ -1.6
LIM2P55344 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.03□□□□□ -1.6
LIM2P55344 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 RNU1-19P-201ENST00000363306 165 ntBASIC5.03□□□□□ -1.6
LIM2P55344 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
LIM2P55344 MTND4LP21-201ENST00000415303 295 ntBASIC5.03□□□□□ -1.6
LIM2P55344 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.03□□□□□ -1.6
LIM2P55344 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.03□□□□□ -1.6
LIM2P55344 HSPD1P12-201ENST00000429127 1069 ntBASIC5.03□□□□□ -1.6
LIM2P55344 AC124944.2-201ENST00000429866 1242 ntBASIC5.03□□□□□ -1.6
LIM2P55344 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.03□□□□□ -1.6
LIM2P55344 AC016772.1-201ENST00000444170 1261 ntBASIC5.03□□□□□ -1.6
LIM2P55344 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.03□□□□□ -1.6
LIM2P55344 RPL7P40-201ENST00000481703 745 ntBASIC5.03□□□□□ -1.6
LIM2P55344 OR2A3P-201ENST00000493774 953 ntBASIC5.03□□□□□ -1.6
LIM2P55344 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.03□□□□□ -1.6
LIM2P55344 IMPA1P1-201ENST00000510718 842 ntBASIC5.03□□□□□ -1.6
LIM2P55344 RNA5SP230-201ENST00000517039 122 ntBASIC5.03□□□□□ -1.6
LIM2P55344 RNA5SP373-201ENST00000517271 95 ntBASIC5.03□□□□□ -1.6
LIM2P55344 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.03□□□□□ -1.6
LIM2P55344 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.03□□□□□ -1.6
LIM2P55344 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.03□□□□□ -1.6
LIM2P55344 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.03□□□□□ -1.6
LIM2P55344 AC007225.2-201ENST00000562529 256 ntBASIC5.03□□□□□ -1.6
LIM2P55344 AC106730.2-201ENST00000566641 540 ntBASIC5.03□□□□□ -1.6
LIM2P55344 MIR3176-201ENST00000582210 90 ntBASIC5.03□□□□□ -1.6
LIM2P55344 AC010615.3-201ENST00000597319 394 ntBASIC5.03□□□□□ -1.6
LIM2P55344 IMMP1LP3-201ENST00000604197 224 ntBASIC5.03□□□□□ -1.6
LIM2P55344 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.03□□□□□ -1.6
LIM2P55344 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.03□□□□□ -1.6
LIM2P55344 FRG1EP-201ENST00000634469 770 ntBASIC5.03□□□□□ -1.6
LIM2P55344 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.03□□□□□ -1.6
LIM2P55344 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 AC005261.2-201ENST00000593427 4258 ntBASIC5.03□□□□□ -1.6
LIM2P55344 AL034549.2-201ENST00000618285 3373 ntBASIC5.03□□□□□ -1.6
LIM2P55344 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
LIM2P55344 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
LIM2P55344 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 MTCO1P11-201ENST00000429111 1528 ntBASIC5.02□□□□□ -1.61
LIM2P55344 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIM2P55344 NAMPTP1-201ENST00000440465 2514 ntBASIC5.02□□□□□ -1.61
LIM2P55344 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIM2P55344 AP005435.3-201ENST00000531260 3198 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.02□□□□□ -1.61
LIM2P55344 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LIM2P55344 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
LIM2P55344 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIM2P55344 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
LIM2P55344 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.02□□□□□ -1.61
LIM2P55344 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.02□□□□□ -1.61
LIM2P55344 ADAM5-202ENST00000399789 1942 ntBASIC5.02□□□□□ -1.61
LIM2P55344 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LIM2P55344 U3.7-201ENST00000363668 216 ntBASIC5.02□□□□□ -1.61
LIM2P55344 OR1L6-202ENST00000373684 1044 ntBASIC5.02□□□□□ -1.61
LIM2P55344 MIR105-1-201ENST00000385222 81 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.02□□□□□ -1.61
LIM2P55344 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.02□□□□□ -1.61
LIM2P55344 TRGV7-201ENST00000427089 353 ntBASIC5.02□□□□□ -1.61
LIM2P55344 BX119904.3-201ENST00000428194 957 ntBASIC5.02□□□□□ -1.61
LIM2P55344 RPL19P16-201ENST00000433839 588 ntBASIC5.02□□□□□ -1.61
LIM2P55344 MTND4LP12-201ENST00000448237 295 ntBASIC5.02□□□□□ -1.61
LIM2P55344 OR52E3P-201ENST00000452083 936 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC079168.1-201ENST00000458741 345 ntBASIC5.02□□□□□ -1.61
LIM2P55344 OR2AO1P-201ENST00000476497 403 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC093827.1-201ENST00000480094 861 ntBASIC5.02□□□□□ -1.61
LIM2P55344 RPL7P6-201ENST00000480903 738 ntBASIC5.02□□□□□ -1.61
LIM2P55344 RPL7P39-201ENST00000481157 744 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC022133.1-201ENST00000490961 571 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AP000926.3-201ENST00000497201 299 ntBASIC5.02□□□□□ -1.61
LIM2P55344 RPS24P16-201ENST00000497294 392 ntBASIC5.02□□□□□ -1.61
LIM2P55344 PGAM1P13-201ENST00000507497 754 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.02□□□□□ -1.61
LIM2P55344 AC016559.2-201ENST00000510759 359 ntBASIC5.02□□□□□ -1.61
LIM2P55344 RNU4-18P-201ENST00000516751 149 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC022360.1-201ENST00000521058 340 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LIM2P55344 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.02□□□□□ -1.61
LIM2P55344 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIM2P55344 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
LIM2P55344 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIM2P55344 AL049779.2-201ENST00000553847 315 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.02□□□□□ -1.61
LIM2P55344 MTCYBP13-201ENST00000578634 1093 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.02□□□□□ -1.61
LIM2P55344 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.02□□□□□ -1.61
LIM2P55344 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.02□□□□□ -1.61
LIM2P55344 AC096586.2-201ENST00000610260 441 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC109309.2-201ENST00000612597 332 ntBASIC5.02□□□□□ -1.61
LIM2P55344 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.02□□□□□ -1.61
LIM2P55344 CYP4F35P-202ENST00000636121 390 ntBASIC5.02□□□□□ -1.61
LIM2P55344 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LIM2P55344 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms