Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FHIT-201ENST00000341848 174 ntTSL 3 BASIC8.55□□□□□ -1.04
CUX1P39880 BX510359.2-201ENST00000417920 305 ntBASIC8.55□□□□□ -1.04
CUX1P39880 SLC9B1P4-201ENST00000421957 1288 ntBASIC8.55□□□□□ -1.04
CUX1P39880 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC8.55□□□□□ -1.04
CUX1P39880 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC8.55□□□□□ -1.04
CUX1P39880 AC009963.2-201ENST00000453431 138 ntBASIC8.55□□□□□ -1.04
CUX1P39880 AL356390.1-201ENST00000455684 397 ntBASIC8.55□□□□□ -1.04
CUX1P39880 IGBP1P4-201ENST00000503202 879 ntBASIC8.55□□□□□ -1.04
CUX1P39880 SCARNA22-201ENST00000503991 125 ntBASIC8.55□□□□□ -1.04
CUX1P39880 AP001880.2-201ENST00000538233 448 ntBASIC8.55□□□□□ -1.04
CUX1P39880 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC8.55□□□□□ -1.04
CUX1P39880 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC8.55□□□□□ -1.04
CUX1P39880 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC8.55□□□□□ -1.04
CUX1P39880 ZNF652P1-201ENST00000442420 1309 ntBASIC8.55□□□□□ -1.04
CUX1P39880 KYNUP3-201ENST00000574386 1341 ntBASIC8.55□□□□□ -1.04
CUX1P39880 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC8.55□□□□□ -1.04
CUX1P39880 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC8.55□□□□□ -1.04
CUX1P39880 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
CUX1P39880 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
CUX1P39880 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
CUX1P39880 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
CUX1P39880 MAPK10-270ENST00000641102 3538 ntBASIC8.55□□□□□ -1.04
CUX1P39880 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC8.55□□□□□ -1.04
CUX1P39880 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC8.55□□□□□ -1.04
CUX1P39880 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC8.55□□□□□ -1.04
CUX1P39880 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CUX1P39880 ELOCP19-201ENST00000411919 318 ntBASIC8.54□□□□□ -1.04
CUX1P39880 AC007064.3-201ENST00000422608 359 ntBASIC8.54□□□□□ -1.04
CUX1P39880 AC010733.1-201ENST00000451515 401 ntBASIC8.54□□□□□ -1.04
CUX1P39880 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC8.54□□□□□ -1.04
CUX1P39880 AC103987.1-201ENST00000473394 348 ntBASIC8.54□□□□□ -1.04
CUX1P39880 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC8.54□□□□□ -1.04
CUX1P39880 SSX9-202ENST00000608568 580 ntTSL 4 BASIC8.54□□□□□ -1.04
CUX1P39880 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC8.54□□□□□ -1.04
CUX1P39880 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC8.54□□□□□ -1.04
CUX1P39880 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC8.54□□□□□ -1.04
CUX1P39880 DHX40P1-201ENST00000588725 1412 ntBASIC8.54□□□□□ -1.04
CUX1P39880 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
CUX1P39880 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
CUX1P39880 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
CUX1P39880 PRNCR1-201ENST00000635449 12727 ntBASIC8.54□□□□□ -1.04
CUX1P39880 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
CUX1P39880 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
CUX1P39880 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CUX1P39880 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC8.54□□□□□ -1.04
CUX1P39880 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC8.54□□□□□ -1.04
CUX1P39880 RNA5SP479-201ENST00000364858 117 ntBASIC8.54□□□□□ -1.04
CUX1P39880 RPS3AP23-201ENST00000401762 784 ntBASIC8.54□□□□□ -1.04
CUX1P39880 AL049693.1-201ENST00000402760 611 ntBASIC8.54□□□□□ -1.04
CUX1P39880 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC8.54□□□□□ -1.04
CUX1P39880 AC068287.1-201ENST00000430283 295 ntBASIC8.54□□□□□ -1.04
CUX1P39880 BX679664.2-201ENST00000439282 283 ntBASIC8.54□□□□□ -1.04
CUX1P39880 RPS24P16-201ENST00000497294 392 ntBASIC8.54□□□□□ -1.04
CUX1P39880 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
CUX1P39880 AC025674.1-201ENST00000507074 324 ntBASIC8.54□□□□□ -1.04
CUX1P39880 AP002981.1-201ENST00000517692 975 ntBASIC8.54□□□□□ -1.04
CUX1P39880 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC8.54□□□□□ -1.04
CUX1P39880 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC8.54□□□□□ -1.04
CUX1P39880 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
CUX1P39880 AC079298.1-201ENST00000625026 1619 ntBASIC8.53□□□□□ -1.04
CUX1P39880 AL031123.3-201ENST00000623345 1837 ntBASIC8.53□□□□□ -1.04
CUX1P39880 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC8.53□□□□□ -1.04
CUX1P39880 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CUX1P39880 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC8.53□□□□□ -1.04
CUX1P39880 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC8.53□□□□□ -1.04
CUX1P39880 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CUX1P39880 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC8.53□□□□□ -1.04
CUX1P39880 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
CUX1P39880 SNORA70F-201ENST00000384142 135 ntBASIC8.53□□□□□ -1.04
CUX1P39880 CYCSP11-201ENST00000436426 315 ntBASIC8.53□□□□□ -1.04
CUX1P39880 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC8.53□□□□□ -1.04
CUX1P39880 AL356981.1-201ENST00000454879 684 ntBASIC8.53□□□□□ -1.04
CUX1P39880 OR52A4P-201ENST00000472867 958 ntBASIC8.53□□□□□ -1.04
CUX1P39880 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC8.53□□□□□ -1.04
CUX1P39880 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC8.53□□□□□ -1.04
CUX1P39880 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC8.53□□□□□ -1.04
CUX1P39880 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC8.53□□□□□ -1.04
CUX1P39880 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC8.53□□□□□ -1.04
CUX1P39880 CR381572.2-201ENST00000624852 397 ntBASIC8.53□□□□□ -1.04
CUX1P39880 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC8.53□□□□□ -1.04
CUX1P39880 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
CUX1P39880 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
CUX1P39880 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC8.52□□□□□ -1.04
CUX1P39880 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
CUX1P39880 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC8.52□□□□□ -1.05
CUX1P39880 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC8.52□□□□□ -1.05
CUX1P39880 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
CUX1P39880 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC8.52□□□□□ -1.05
CUX1P39880 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.05
CUX1P39880 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC8.52□□□□□ -1.05
CUX1P39880 AC005412.2-201ENST00000492004 341 ntBASIC8.52□□□□□ -1.05
CUX1P39880 IMPA1P1-201ENST00000510718 842 ntBASIC8.52□□□□□ -1.05
CUX1P39880 RN7SKP122-201ENST00000515923 296 ntBASIC8.52□□□□□ -1.05
CUX1P39880 AP001804.1-201ENST00000526868 919 ntBASIC8.52□□□□□ -1.05
CUX1P39880 MYLK-221ENST00000583087 678 ntTSL 4 BASIC8.52□□□□□ -1.05
CUX1P39880 OR52H1-202ENST00000641796 1061 ntBASIC8.52□□□□□ -1.05
CUX1P39880 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
CUX1P39880 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC8.52□□□□□ -1.05
CUX1P39880 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC8.52□□□□□ -1.05
CUX1P39880 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms