Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 AC006206.1-201ENST00000544842 3387 ntBASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 UGT2B24P-201ENST00000514441 1597 ntBASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 AL117378.2-201ENST00000622916 1337 ntBASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 OR5M12P-201ENST00000423388 929 ntBASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC034205.1-201ENST00000520621 638 ntBASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 OR11H3P-201ENST00000554547 982 ntBASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC135068.5-201ENST00000624197 983 ntBASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 ALB-220ENST00000621628 1606 ntTSL 5 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 NLN-202ENST00000502464 8354 ntTSL 5 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC012519.1-201ENST00000424588 610 ntBASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 OR5AN2P-201ENST00000534535 896 ntBASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC122688.1-201ENST00000541494 223 ntBASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC104687.2-201ENST00000604442 342 ntBASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 AC099494.2-201ENST00000623371 978 ntBASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC10.17□□□□□ -0.78
SHROOM4Q9ULL8 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 AL078621.3-201ENST00000623707 2042 ntBASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 DMD-205ENST00000359836 7339 ntTSL 5 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 RPL18P10-201ENST00000425606 538 ntBASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 AP002371.1-201ENST00000463604 433 ntBASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 AC018558.5-201ENST00000565840 952 ntBASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 UBE2FP2-201ENST00000566646 462 ntBASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
SHROOM4Q9ULL8 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 AC006600.2-201ENST00000624834 2506 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 RNGTTP1-201ENST00000420965 728 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 MGAT2P2-201ENST00000427194 797 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 AC008072.1-201ENST00000434254 824 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 NPM1P48-201ENST00000436002 853 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 RPS23P7-201ENST00000466210 444 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 AC058823.1-201ENST00000485315 474 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 AC109464.1-201ENST00000511091 819 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 AC021006.3-201ENST00000530771 192 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 AC005000.1-201ENST00000536192 288 ntBASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
SHROOM4Q9ULL8 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC10.15□□□□□ -0.79
SHROOM4Q9ULL8 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 ATP6V1G1P7-201ENST00000415853 349 ntBASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 AL390879.1-201ENST00000439143 386 ntBASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 BX679664.2-201ENST00000439282 283 ntBASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
SHROOM4Q9ULL8 AP005212.4-201ENST00000614206 710 ntBASIC10.14□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms