Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSH6P52701 SAMM50P1-201ENST00000455403 1399 ntBASIC7.38□□□□□ -1.23
MSH6P52701 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSH6P52701 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
MSH6P52701 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSH6P52701 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
MSH6P52701 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSH6P52701 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
MSH6P52701 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC7.37□□□□□ -1.23
MSH6P52701 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSH6P52701 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
MSH6P52701 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSH6P52701 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC7.37□□□□□ -1.23
MSH6P52701 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSH6P52701 AP002530.1-201ENST00000405705 684 ntBASIC7.37□□□□□ -1.23
MSH6P52701 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC7.37□□□□□ -1.23
MSH6P52701 AC069213.2-201ENST00000420238 366 ntBASIC7.37□□□□□ -1.23
MSH6P52701 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC7.37□□□□□ -1.23
MSH6P52701 CCNB1IP1P2-201ENST00000432876 818 ntBASIC7.37□□□□□ -1.23
MSH6P52701 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC7.37□□□□□ -1.23
MSH6P52701 KNOP1P3-201ENST00000446933 426 ntBASIC7.37□□□□□ -1.23
MSH6P52701 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC7.37□□□□□ -1.23
MSH6P52701 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC7.37□□□□□ -1.23
MSH6P52701 SLC25A15P5-201ENST00000508033 253 ntBASIC7.37□□□□□ -1.23
MSH6P52701 RN7SKP248-201ENST00000516278 305 ntBASIC7.37□□□□□ -1.23
MSH6P52701 ASB8-204ENST00000536071 568 ntTSL 4 BASIC7.37□□□□□ -1.23
MSH6P52701 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC7.37□□□□□ -1.23
MSH6P52701 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC7.37□□□□□ -1.23
MSH6P52701 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC7.37□□□□□ -1.23
MSH6P52701 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSH6P52701 AC091046.3-201ENST00000631455 1574 ntBASIC7.37□□□□□ -1.23
MSH6P52701 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC7.37□□□□□ -1.23
MSH6P52701 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
MSH6P52701 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC7.37□□□□□ -1.23
MSH6P52701 KYNUP3-201ENST00000574386 1341 ntBASIC7.37□□□□□ -1.23
MSH6P52701 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSH6P52701 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC7.37□□□□□ -1.23
MSH6P52701 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
MSH6P52701 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.37□□□□□ -1.23
MSH6P52701 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
MSH6P52701 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSH6P52701 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSH6P52701 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
MSH6P52701 RNA5SP428-201ENST00000365129 132 ntBASIC7.36□□□□□ -1.23
MSH6P52701 HSPA8P15-201ENST00000401676 786 ntBASIC7.36□□□□□ -1.23
MSH6P52701 GTF2IP2-201ENST00000424290 697 ntBASIC7.36□□□□□ -1.23
MSH6P52701 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSH6P52701 AC112498.1-201ENST00000444401 332 ntBASIC7.36□□□□□ -1.23
MSH6P52701 AC092754.1-201ENST00000472975 479 ntBASIC7.36□□□□□ -1.23
MSH6P52701 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC7.36□□□□□ -1.23
MSH6P52701 RNA5SP116-201ENST00000516132 98 ntBASIC7.36□□□□□ -1.23
MSH6P52701 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC7.36□□□□□ -1.23
MSH6P52701 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC7.36□□□□□ -1.23
MSH6P52701 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC7.36□□□□□ -1.23
MSH6P52701 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC7.36□□□□□ -1.23
MSH6P52701 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC7.36□□□□□ -1.23
MSH6P52701 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC7.36□□□□□ -1.23
MSH6P52701 AC135068.12-201ENST00000637370 931 ntBASIC7.36□□□□□ -1.23
MSH6P52701 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
MSH6P52701 ATP5A1P1-201ENST00000454088 1321 ntBASIC7.36□□□□□ -1.23
MSH6P52701 AL353796.1-201ENST00000561542 3241 ntBASIC7.36□□□□□ -1.23
MSH6P52701 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC7.36□□□□□ -1.23
MSH6P52701 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSH6P52701 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSH6P52701 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
MSH6P52701 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSH6P52701 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC7.36□□□□□ -1.23
MSH6P52701 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
MSH6P52701 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSH6P52701 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
MSH6P52701 RPS4XP16-201ENST00000427198 791 ntBASIC7.35□□□□□ -1.23
MSH6P52701 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC7.35□□□□□ -1.23
MSH6P52701 H3F3BP1-201ENST00000440551 403 ntBASIC7.35□□□□□ -1.23
MSH6P52701 RPL34P20-201ENST00000442771 351 ntBASIC7.35□□□□□ -1.23
MSH6P52701 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC7.35□□□□□ -1.23
MSH6P52701 AC009643.1-201ENST00000532030 391 ntBASIC7.35□□□□□ -1.23
MSH6P52701 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC7.35□□□□□ -1.23
MSH6P52701 RN7SL356P-201ENST00000582228 248 ntBASIC7.35□□□□□ -1.23
MSH6P52701 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC7.35□□□□□ -1.23
MSH6P52701 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC7.35□□□□□ -1.23
MSH6P52701 AL034374.2-201ENST00000605281 548 ntBASIC7.35□□□□□ -1.23
MSH6P52701 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC7.35□□□□□ -1.23
MSH6P52701 AC091932.2-201ENST00000623014 291 ntBASIC7.35□□□□□ -1.23
MSH6P52701 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC7.35□□□□□ -1.23
MSH6P52701 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC7.35□□□□□ -1.23
MSH6P52701 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC7.35□□□□□ -1.23
MSH6P52701 AC144833.1-201ENST00000567953 4089 ntBASIC7.35□□□□□ -1.23
MSH6P52701 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
MSH6P52701 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSH6P52701 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC7.35□□□□□ -1.23
MSH6P52701 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC7.35□□□□□ -1.23
MSH6P52701 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
MSH6P52701 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
MSH6P52701 RPL10P10-201ENST00000403509 664 ntBASIC7.34□□□□□ -1.23
MSH6P52701 AC096921.1-201ENST00000411661 375 ntBASIC7.34□□□□□ -1.23
MSH6P52701 RPS27AP6-201ENST00000427962 448 ntBASIC7.34□□□□□ -1.23
MSH6P52701 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC7.34□□□□□ -1.23
MSH6P52701 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC7.34□□□□□ -1.23
MSH6P52701 snoU109.5-201ENST00000516231 132 ntBASIC7.34□□□□□ -1.23
MSH6P52701 GTF2IP11-201ENST00000526931 420 ntBASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms