Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
DKK3Q9UBP4 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
DKK3Q9UBP4 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 NAMPTP1-201ENST00000440465 2514 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 HSPD1P7-201ENST00000447985 1686 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 CIR1P2-201ENST00000514821 1342 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC023490.2-201ENST00000359859 470 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 OR10R3P-201ENST00000361688 942 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 RN7SKP69-201ENST00000365390 305 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 HMGN1P20-201ENST00000411849 300 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 SETP8-201ENST00000435341 628 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 BMS1P10-201ENST00000443754 1120 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 ELOCP13-201ENST00000443934 329 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC104164.3-201ENST00000467363 1258 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AL122020.1-201ENST00000472287 459 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 RPS4XP14-201ENST00000493072 781 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 RN7SL101P-201ENST00000496350 279 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 CCDC11P1-201ENST00000503137 1162 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 BOLA3P3-201ENST00000505182 232 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 Y_RNA.667-201ENST00000516212 107 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 RN7SKP265-201ENST00000516448 223 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 RNA5SP438-201ENST00000516561 112 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 RNA5SP271-201ENST00000516700 88 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 FTH1P11-201ENST00000517577 551 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AP000648.1-201ENST00000529682 397 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC087888.1-201ENST00000550884 1254 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AL358913.1-201ENST00000554342 121 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 AL031601.1-201ENST00000605702 394 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 MIR8084-201ENST00000614105 89 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 RARSP1-201ENST00000542842 1418 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 CASC19-260ENST00000641828 2001 ntBASIC6.04□□□□□ -1.44
DKK3Q9UBP4 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.04□□□□□ -1.44
DKK3Q9UBP4 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 CR382285.2-201ENST00000624662 1495 ntBASIC6.03□□□□□ -1.44
DKK3Q9UBP4 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 MAPK10-338ENST00000641647 3362 ntBASIC6.03□□□□□ -1.44
DKK3Q9UBP4 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 AC016739.1-201ENST00000405359 345 ntBASIC6.03□□□□□ -1.44
DKK3Q9UBP4 AL512422.1-201ENST00000407033 553 ntBASIC6.03□□□□□ -1.44
DKK3Q9UBP4 MYL6P5-201ENST00000412707 459 ntBASIC6.03□□□□□ -1.44
DKK3Q9UBP4 SLC20A1P1-201ENST00000413906 956 ntBASIC6.03□□□□□ -1.44
DKK3Q9UBP4 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 AC013262.1-201ENST00000426710 252 ntBASIC6.03□□□□□ -1.44
DKK3Q9UBP4 AC016027.5-201ENST00000427227 210 ntBASIC6.03□□□□□ -1.44
DKK3Q9UBP4 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 Z99127.2-201ENST00000441426 334 ntBASIC6.03□□□□□ -1.44
DKK3Q9UBP4 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
DKK3Q9UBP4 MTND1P31-201ENST00000449206 961 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms