Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC3.61□□□□□ -1.83
PRKDCP78527 AC011471.1-201ENST00000585766 187 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 NCLP2-201ENST00000416078 1462 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
PRKDCP78527 TAF1L-201ENST00000242310 6216 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
PRKDCP78527 FRMD6-202ENST00000356218 4768 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC3.61□□□□□ -1.83
PRKDCP78527 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC3.61□□□□□ -1.83
PRKDCP78527 WDR19-201ENST00000399820 4520 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 AC009951.1-201ENST00000623674 2614 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 CYB5R4-202ENST00000369681 9252 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 AC233289.1-201ENST00000403700 508 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 OR13Z1P-201ENST00000416141 834 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 RPL7P15-201ENST00000461190 712 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 RPS12P31-201ENST00000491419 398 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 RN7SL244P-201ENST00000493405 297 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC3.61□□□□□ -1.83
PRKDCP78527 MTCO1P35-201ENST00000515270 228 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 RN7SKP98-201ENST00000517070 156 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC3.61□□□□□ -1.83
PRKDCP78527 AC013731.1-201ENST00000604340 883 ntBASIC3.61□□□□□ -1.83
PRKDCP78527 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.61□□□□□ -1.83
PRKDCP78527 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 FAT4-201ENST00000335110 9669 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PRKDCP78527 SPTAN1-223ENST00000630866 7498 ntTSL 5 BASIC3.61□□□□□ -1.83
PRKDCP78527 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
PRKDCP78527 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC3.6□□□□□ -1.83
PRKDCP78527 AC055713.1-201ENST00000498967 8279 ntTSL 2 BASIC3.6□□□□□ -1.83
PRKDCP78527 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 RNA5SP90-201ENST00000364801 99 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.6□□□□□ -1.83
PRKDCP78527 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
PRKDCP78527 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 AC079168.2-201ENST00000453977 416 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 RPL21P126-201ENST00000470049 478 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 IGLVIV-65-201ENST00000517313 360 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 AC012400.1-201ENST00000518452 381 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 MRPL49P2-201ENST00000521066 465 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.6□□□□□ -1.83
PRKDCP78527 NMNAT1P1-201ENST00000554095 876 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 ZNF415P1-201ENST00000582279 1166 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 AC007497.1-201ENST00000610421 561 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 AC074101.1-201ENST00000637861 241 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
PRKDCP78527 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC3.6□□□□□ -1.83
PRKDCP78527 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
PRKDCP78527 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 CEP350-202ENST00000367607 13491 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 AL391262.1-201ENST00000556558 1992 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
PRKDCP78527 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 DNAH9-203ENST00000454412 13452 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 MIR449B-201ENST00000384995 97 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 RPL7AP25-201ENST00000423357 805 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 HSFY1P1-201ENST00000423928 1178 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC3.6□□□□□ -1.83
PRKDCP78527 H3F3BP1-201ENST00000440551 403 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 RRM2P4-201ENST00000441721 562 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 AL500522.2-201ENST00000448562 343 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 AC079080.1-201ENST00000479841 822 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 RPS27AP16-201ENST00000492222 470 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
PRKDCP78527 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC3.6□□□□□ -1.83
PRKDCP78527 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.6□□□□□ -1.83
PRKDCP78527 CDRT1-208ENST00000630868 794 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
PRKDCP78527 CDH7-202ENST00000397968 12231 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 SLIT3-202ENST00000404867 8903 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 PPIP5K1-204ENST00000360301 5565 ntAPPRIS P3 TSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC3.6□□□□□ -1.83
PRKDCP78527 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms