Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 AC006042.3-201ENST00000454684 1469 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC217777.1-201ENST00000570034 1471 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.65□□□□□ -1.5
CLRN1P58418 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC5.65□□□□□ -1.5
CLRN1P58418 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
CLRN1P58418 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
CLRN1P58418 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.65□□□□□ -1.5
CLRN1P58418 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CLRN1P58418 RNU4-24P-201ENST00000364565 139 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 RNA5SP485-201ENST00000365053 119 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 MT-TP-201ENST00000387461 68 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.65□□□□□ -1.5
CLRN1P58418 AL138880.1-201ENST00000405824 642 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 HMGB3P18-201ENST00000406327 590 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 RPS17P17-201ENST00000419392 409 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 CYP4F30P-202ENST00000420048 405 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC234781.2-201ENST00000426370 994 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AL035407.1-201ENST00000429211 571 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 MTND1P34-201ENST00000438556 671 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 AC092170.1-201ENST00000440211 356 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 UBQLN1P1-207ENST00000441056 1169 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC5.65□□□□□ -1.5
CLRN1P58418 PA2G4P1-201ENST00000442248 1197 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC016772.1-201ENST00000444170 1261 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 EEF1B2P5-201ENST00000444820 548 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 RPS27AP8-201ENST00000452665 445 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
CLRN1P58418 MTND3P7-201ENST00000474435 343 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 RN7SL165P-201ENST00000477476 291 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 AC114324.2-202ENST00000503812 134 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC018645.1-201ENST00000505003 109 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC091860.1-201ENST00000505723 432 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 AC113347.3-201ENST00000509113 148 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC010343.2-201ENST00000510162 224 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.65□□□□□ -1.5
CLRN1P58418 RNA5SP418-201ENST00000515951 117 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 RNA5SP400-201ENST00000517155 111 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 AL133399.1-201ENST00000527476 298 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.65□□□□□ -1.5
CLRN1P58418 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.65□□□□□ -1.5
CLRN1P58418 MIR212-201ENST00000586026 110 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.65□□□□□ -1.5
CLRN1P58418 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 MRPS35P3-201ENST00000603189 709 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC073046.2-201ENST00000604756 527 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CLRN1P58418 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC5.65□□□□□ -1.5
CLRN1P58418 MIR7159-201ENST00000620587 66 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC025262.3-201ENST00000623666 360 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC024023.1-201ENST00000624530 922 ntBASIC5.65□□□□□ -1.5
CLRN1P58418 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.65□□□□□ -1.5
CLRN1P58418 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CLRN1P58418 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.65□□□□□ -1.51
CLRN1P58418 AC073055.1-201ENST00000456901 1621 ntBASIC5.65□□□□□ -1.51
CLRN1P58418 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CLRN1P58418 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
CLRN1P58418 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CLRN1P58418 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.65□□□□□ -1.51
CLRN1P58418 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.65□□□□□ -1.51
CLRN1P58418 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CLRN1P58418 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
CLRN1P58418 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.65□□□□□ -1.51
CLRN1P58418 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CLRN1P58418 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.65□□□□□ -1.51
CLRN1P58418 AL049737.1-201ENST00000413920 1403 ntBASIC5.65□□□□□ -1.51
CLRN1P58418 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
CLRN1P58418 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
CLRN1P58418 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CLRN1P58418 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
CLRN1P58418 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC5.64□□□□□ -1.51
CLRN1P58418 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CLRN1P58418 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CLRN1P58418 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CLRN1P58418 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
CLRN1P58418 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CLRN1P58418 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CLRN1P58418 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.64□□□□□ -1.51
CLRN1P58418 CAST-202ENST00000325674 3356 ntTSL 5 BASIC5.64□□□□□ -1.51
CLRN1P58418 NACA3P-201ENST00000359690 648 ntBASIC5.64□□□□□ -1.51
CLRN1P58418 RNA5SP85-201ENST00000365378 119 ntBASIC5.64□□□□□ -1.51
CLRN1P58418 SNORA40.2-201ENST00000390847 128 ntBASIC5.64□□□□□ -1.51
CLRN1P58418 RN7SKP161-201ENST00000411110 305 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms