Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.31□□□□□ -1.4
BRCA1P38398 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.31□□□□□ -1.4
BRCA1P38398 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.31□□□□□ -1.4
BRCA1P38398 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.31□□□□□ -1.4
BRCA1P38398 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
BRCA1P38398 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
BRCA1P38398 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.31□□□□□ -1.4
BRCA1P38398 CRIP1P1-201ENST00000427567 185 ntBASIC6.31□□□□□ -1.4
BRCA1P38398 EIF2S2P2-201ENST00000447161 982 ntBASIC6.31□□□□□ -1.4
BRCA1P38398 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC6.31□□□□□ -1.4
BRCA1P38398 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.31□□□□□ -1.4
BRCA1P38398 OR5M2P-201ENST00000529003 936 ntBASIC6.31□□□□□ -1.4
BRCA1P38398 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC6.31□□□□□ -1.4
BRCA1P38398 AC135068.12-201ENST00000637370 931 ntBASIC6.31□□□□□ -1.4
BRCA1P38398 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 AP003175.1-201ENST00000641383 6658 ntBASIC6.31□□□□□ -1.4
BRCA1P38398 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.31□□□□□ -1.4
BRCA1P38398 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
BRCA1P38398 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
BRCA1P38398 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
BRCA1P38398 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 ASNSP1-204ENST00000641977 1664 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 U3.28-201ENST00000391249 210 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 BX510359.2-201ENST00000417920 305 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 AL161722.2-201ENST00000434731 981 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 RPS29P10-201ENST00000439197 166 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 RN7SL814P-201ENST00000487715 300 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 IGKV2D-10-201ENST00000520194 281 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.3□□□□□ -1.4
BRCA1P38398 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
BRCA1P38398 AP001521.2-201ENST00000608772 546 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC6.3□□□□□ -1.4
BRCA1P38398 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.3□□□□□ -1.4
BRCA1P38398 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
BRCA1P38398 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
BRCA1P38398 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
BRCA1P38398 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
BRCA1P38398 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
BRCA1P38398 SNORA70H-201ENST00000383910 135 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 SNORA70J-201ENST00000384182 135 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 RN7SKP106-201ENST00000410832 272 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 RN7SKP263-201ENST00000411194 309 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC6.3□□□□□ -1.4
BRCA1P38398 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC6.3□□□□□ -1.4
BRCA1P38398 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 SCARNA22-201ENST00000503991 125 ntBASIC6.3□□□□□ -1.4
BRCA1P38398 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC6.3□□□□□ -1.4
BRCA1P38398 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC6.3□□□□□ -1.4
BRCA1P38398 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC6.3□□□□□ -1.4
BRCA1P38398 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.3□□□□□ -1.4
BRCA1P38398 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.3□□□□□ -1.4
BRCA1P38398 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
BRCA1P38398 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.29□□□□□ -1.4
BRCA1P38398 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.29□□□□□ -1.4
BRCA1P38398 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
BRCA1P38398 SNORA77-201ENST00000408716 125 ntBASIC6.29□□□□□ -1.4
BRCA1P38398 SNX10-203ENST00000409367 746 ntTSL 5 BASIC6.29□□□□□ -1.4
BRCA1P38398 AC010733.1-201ENST00000451515 401 ntBASIC6.29□□□□□ -1.4
BRCA1P38398 AL356390.1-201ENST00000455684 397 ntBASIC6.29□□□□□ -1.4
BRCA1P38398 AC012400.1-201ENST00000518452 381 ntBASIC6.29□□□□□ -1.4
BRCA1P38398 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC6.29□□□□□ -1.4
BRCA1P38398 AC027667.1-201ENST00000545814 304 ntBASIC6.29□□□□□ -1.4
BRCA1P38398 FTO-223ENST00000640179 210 ntTSL 5 BASIC6.29□□□□□ -1.4
BRCA1P38398 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.29□□□□□ -1.4
BRCA1P38398 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.29□□□□□ -1.4
BRCA1P38398 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.29□□□□□ -1.4
BRCA1P38398 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
BRCA1P38398 AC010329.1-201ENST00000593903 8328 ntBASIC6.29□□□□□ -1.4
BRCA1P38398 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.29□□□□□ -1.4
BRCA1P38398 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.29□□□□□ -1.4
BRCA1P38398 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.29□□□□□ -1.4
BRCA1P38398 AC005725.1-201ENST00000577346 2607 ntBASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms