Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
COL6A3P12111 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 RPS3AP54-201ENST00000435535 734 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 AL162591.2-201ENST00000449634 317 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
COL6A3P12111 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 FAM91A3P-201ENST00000456826 2544 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 MPP7-203ENST00000375732 5063 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
COL6A3P12111 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
COL6A3P12111 AC006511.3-201ENST00000624929 1783 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 PRDM11-206ENST00000622142 10730 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 SZT2-209ENST00000562955 13968 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 BAZ2A-214ENST00000551812 8600 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 SMARCA2-258ENST00000637103 5657 ntTSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 AC096921.1-201ENST00000411661 375 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 TPT1P2-201ENST00000413105 503 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 HMGB3P5-201ENST00000428894 612 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 RPS29P17-201ENST00000430795 166 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AL050321.1-201ENST00000432363 400 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 ACTR3P2-201ENST00000439585 1257 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 TCEA1P1-201ENST00000449716 880 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 PRELID3BP6-201ENST00000503839 571 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A3P12111 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A3P12111 OR6C71P-202ENST00000641886 1107 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 PABPC1P8-201ENST00000452851 2086 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 ZNF844-201ENST00000439326 6620 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 PAN2-221ENST00000610546 5301 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.22□□□□□ -1.57
COL6A3P12111 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 CYCSP11-201ENST00000436426 315 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 MTND6P5-201ENST00000448266 512 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 RPL23AP94-201ENST00000512518 302 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A3P12111 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A3P12111 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
COL6A3P12111 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 CASC15-203ENST00000605917 4461 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A3P12111 SNORA66-201ENST00000384792 133 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 SNORA77-201ENST00000408716 125 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 AC108064.1-201ENST00000513791 460 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AC137627.1-201ENST00000545761 289 ntBASIC5.22□□□□□ -1.57
COL6A3P12111 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.22□□□□□ -1.57
COL6A3P12111 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A3P12111 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.21□□□□□ -1.57
COL6A3P12111 RAD17P2-201ENST00000451754 1977 ntBASIC5.21□□□□□ -1.57
COL6A3P12111 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
COL6A3P12111 VN1R21P-201ENST00000426703 765 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A3P12111 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL6A3P12111 AC092754.1-201ENST00000472975 479 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A3P12111 AC040958.1-201ENST00000561102 201 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A3P12111 RN7SL703P-201ENST00000578485 302 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.21□□□□□ -1.58
COL6A3P12111 AC090506.2-201ENST00000624521 419 ntBASIC5.21□□□□□ -1.58
COL6A3P12111 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.21□□□□□ -1.58
COL6A3P12111 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.21□□□□□ -1.58
COL6A3P12111 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.21□□□□□ -1.58
COL6A3P12111 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A3P12111 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A3P12111 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms