Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 HMGB3P24-201ENST00000433260 622 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC097484.1-201ENST00000471148 389 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 PPP1R11P1-201ENST00000486095 376 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC008897.1-201ENST00000494006 347 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC011840.5-201ENST00000582125 771 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 DLEU1_1.1-201ENST00000618107 190 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AP001784.1-201ENST00000624107 428 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 RNU1-59P-201ENST00000364829 162 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 ZDHHC20P1-204ENST00000435787 423 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 OR6D1P-201ENST00000436165 939 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 ATP5A1P7-201ENST00000453978 1279 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 FRG2FP-204ENST00000453982 852 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 snoU13.29-201ENST00000459370 104 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 RPL7P16-201ENST00000479738 738 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 RPL37AP8-201ENST00000494116 276 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 U1.25-201ENST00000614085 162 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 U1.34-201ENST00000618578 162 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 U1.31-201ENST00000620022 160 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AP001273.1-201ENST00000624493 3152 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 SAMM50P1-201ENST00000455403 1399 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL772161.1-201ENST00000439130 476 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 BZW1P1-201ENST00000454901 1240 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 CCDC11P1-201ENST00000503137 1162 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC092375.1-201ENST00000550410 637 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC011497.2-201ENST00000600255 639 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL596275.2-208ENST00000641192 594 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC011493.1-201ENST00000596753 1632 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC073869.10-201ENST00000642016 354 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL359265.2-201ENST00000434367 631 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 OSTCP1-201ENST00000455507 450 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 RN7SL447P-201ENST00000494711 245 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 RPL15P21-201ENST00000495592 567 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC209154.1-201ENST00000582156 337 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL392048.1-201ENST00000613946 534 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 ATP5A1P4-201ENST00000556888 1605 ntBASIC1.66□□□□□ -2.14
SYNE1Q8NF91 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC1.66□□□□□ -2.14
SYNE1Q8NF91 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms