Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL4A4P53420 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL4A4P53420 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL4A4P53420 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL4A4P53420 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL4A4P53420 RNA5SP428-201ENST00000365129 132 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
COL4A4P53420 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC5.63□□□□□ -1.51
COL4A4P53420 RNU11-201ENST00000387069 134 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.63□□□□□ -1.51
COL4A4P53420 MTND2P40-201ENST00000436718 841 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 RPL5P25-201ENST00000441148 775 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC5.63□□□□□ -1.51
COL4A4P53420 AC234781.3-201ENST00000452540 973 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.63□□□□□ -1.51
COL4A4P53420 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
COL4A4P53420 AC093720.1-201ENST00000505681 714 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.63□□□□□ -1.51
COL4A4P53420 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.63□□□□□ -1.51
COL4A4P53420 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL4A4P53420 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.63□□□□□ -1.51
COL4A4P53420 MIR3667-201ENST00000581025 74 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.63□□□□□ -1.51
COL4A4P53420 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL4A4P53420 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.63□□□□□ -1.51
COL4A4P53420 AL360012.1-201ENST00000602813 131 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 MEMO1P5-201ENST00000604810 406 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.63□□□□□ -1.51
COL4A4P53420 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
COL4A4P53420 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC5.62□□□□□ -1.51
COL4A4P53420 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.62□□□□□ -1.51
COL4A4P53420 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
COL4A4P53420 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.62□□□□□ -1.51
COL4A4P53420 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 AC079741.1-201ENST00000321498 212 ntBASIC5.62□□□□□ -1.51
COL4A4P53420 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.62□□□□□ -1.51
COL4A4P53420 GLULP6-201ENST00000399502 913 ntBASIC5.62□□□□□ -1.51
COL4A4P53420 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.62□□□□□ -1.51
COL4A4P53420 NDUFB4P8-201ENST00000435351 367 ntBASIC5.62□□□□□ -1.51
COL4A4P53420 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.62□□□□□ -1.51
COL4A4P53420 AC063943.1-201ENST00000465434 453 ntBASIC5.62□□□□□ -1.51
COL4A4P53420 AC090058.1-201ENST00000498788 435 ntBASIC5.62□□□□□ -1.51
COL4A4P53420 AC140172.1-201ENST00000502928 141 ntBASIC5.62□□□□□ -1.51
COL4A4P53420 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.62□□□□□ -1.51
COL4A4P53420 AC109464.1-201ENST00000511091 819 ntBASIC5.62□□□□□ -1.51
COL4A4P53420 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.62□□□□□ -1.51
COL4A4P53420 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.62□□□□□ -1.51
COL4A4P53420 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.62□□□□□ -1.51
COL4A4P53420 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC5.62□□□□□ -1.51
COL4A4P53420 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.62□□□□□ -1.51
COL4A4P53420 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.62□□□□□ -1.51
COL4A4P53420 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
COL4A4P53420 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL4A4P53420 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL4A4P53420 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL4A4P53420 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
COL4A4P53420 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL4A4P53420 AL354868.1-201ENST00000417077 482 ntBASIC5.61□□□□□ -1.51
COL4A4P53420 OR2AM1P-201ENST00000422137 422 ntBASIC5.61□□□□□ -1.51
COL4A4P53420 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.61□□□□□ -1.51
COL4A4P53420 AC090804.1-201ENST00000448870 490 ntBASIC5.61□□□□□ -1.51
COL4A4P53420 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.61□□□□□ -1.51
COL4A4P53420 RBMY2TP-201ENST00000451162 947 ntBASIC5.61□□□□□ -1.51
COL4A4P53420 AC026402.1-201ENST00000513642 170 ntBASIC5.61□□□□□ -1.51
COL4A4P53420 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.61□□□□□ -1.51
COL4A4P53420 YWHABP2-201ENST00000540201 713 ntBASIC5.61□□□□□ -1.51
COL4A4P53420 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.61□□□□□ -1.51
COL4A4P53420 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.61□□□□□ -1.51
COL4A4P53420 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.61□□□□□ -1.51
COL4A4P53420 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.61□□□□□ -1.51
COL4A4P53420 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.61□□□□□ -1.51
COL4A4P53420 AC098935.2-201ENST00000604222 466 ntBASIC5.61□□□□□ -1.51
COL4A4P53420 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.61□□□□□ -1.51
COL4A4P53420 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.61□□□□□ -1.51
COL4A4P53420 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL4A4P53420 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL4A4P53420 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC5.61□□□□□ -1.51
COL4A4P53420 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL4A4P53420 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL4A4P53420 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL4A4P53420 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL4A4P53420 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.61□□□□□ -1.51
COL4A4P53420 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 AC004076.2-201ENST00000620532 3323 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms