Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.31□□□□□ -1.56
SHMT2P34897 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.31□□□□□ -1.56
SHMT2P34897 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 SNORA51.1-201ENST00000363243 140 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 U3.28-201ENST00000391249 210 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.31□□□□□ -1.56
SHMT2P34897 RPSAP35-201ENST00000413753 818 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 RPL12P17-201ENST00000432393 498 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.31□□□□□ -1.56
SHMT2P34897 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.31□□□□□ -1.56
SHMT2P34897 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.31□□□□□ -1.56
SHMT2P34897 AL672138.1-201ENST00000450604 1015 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 AZGP1P2-201ENST00000454506 345 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.31□□□□□ -1.56
SHMT2P34897 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 RN7SL447P-201ENST00000494711 245 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 GOLGA5P1-201ENST00000507317 980 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
SHMT2P34897 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.31□□□□□ -1.56
SHMT2P34897 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.31□□□□□ -1.56
SHMT2P34897 IGKV2-18-201ENST00000522607 343 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.31□□□□□ -1.56
SHMT2P34897 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.31□□□□□ -1.56
SHMT2P34897 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC5.31□□□□□ -1.56
SHMT2P34897 AC008833.1-201ENST00000611633 691 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.31□□□□□ -1.56
SHMT2P34897 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SHMT2P34897 AC083899.1-201ENST00000454465 3819 ntBASIC5.31□□□□□ -1.56
SHMT2P34897 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
SHMT2P34897 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SHMT2P34897 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
SHMT2P34897 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.3□□□□□ -1.56
SHMT2P34897 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 SNORD56.6-201ENST00000384569 71 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 AC009804.1-201ENST00000400949 179 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 AL391361.1-201ENST00000405580 489 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 RN7SKP59-201ENST00000410520 314 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.3□□□□□ -1.56
SHMT2P34897 NPM1P4-201ENST00000414095 812 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.3□□□□□ -1.56
SHMT2P34897 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.3□□□□□ -1.56
SHMT2P34897 RPL7P45-201ENST00000455851 743 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC5.3□□□□□ -1.56
SHMT2P34897 AC111000.5-201ENST00000506559 1178 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 HMGB1P44-201ENST00000508597 572 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 OR4A17P-201ENST00000526032 904 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.3□□□□□ -1.56
SHMT2P34897 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.3□□□□□ -1.56
SHMT2P34897 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 AP005403.1-201ENST00000579720 229 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.3□□□□□ -1.56
SHMT2P34897 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SHMT2P34897 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SHMT2P34897 AC060766.1-201ENST00000590824 627 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.3□□□□□ -1.56
SHMT2P34897 AC000068.2-201ENST00000608816 460 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 AC109309.2-201ENST00000612597 332 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 AC022467.1-201ENST00000614738 749 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 WBP1LP8-201ENST00000617401 327 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 AC005840.5-201ENST00000619166 599 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 MIR6886-201ENST00000619864 61 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 MIR6837-201ENST00000620884 64 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 FRG1EP-201ENST00000634469 770 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.3□□□□□ -1.56
SHMT2P34897 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SHMT2P34897 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SHMT2P34897 AC073136.1-201ENST00000449426 2884 ntBASIC5.3□□□□□ -1.56
SHMT2P34897 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHMT2P34897 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHMT2P34897 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.29□□□□□ -1.56
SHMT2P34897 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 153.1 ms