Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA9P31269 AC073342.3-201ENST00000624211 193 ntBASIC5.67□□□□□ -1.5
HOXA9P31269 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
HOXA9P31269 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
HOXA9P31269 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA9P31269 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA9P31269 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA9P31269 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA9P31269 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA9P31269 AC020633.1-201ENST00000468439 2247 ntBASIC5.67□□□□□ -1.5
HOXA9P31269 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA9P31269 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
HOXA9P31269 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA9P31269 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA9P31269 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.66□□□□□ -1.5
HOXA9P31269 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA9P31269 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA9P31269 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA9P31269 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXA9P31269 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.66□□□□□ -1.5
HOXA9P31269 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
HOXA9P31269 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXA9P31269 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 RPL37P18-201ENST00000411602 243 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 AL139128.1-201ENST00000413921 941 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 RPS26P13-201ENST00000419030 330 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AC093162.1-201ENST00000419682 124 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 MGAT2P2-201ENST00000427194 797 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA9P31269 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA9P31269 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 HIGD1AP8-201ENST00000453927 274 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 Z92846.1-201ENST00000456203 268 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 RPL35AP28-201ENST00000459730 331 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AC136777.2-201ENST00000522979 358 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 AC127381.1-201ENST00000555979 939 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AP005403.1-201ENST00000579720 229 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXA9P31269 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXA9P31269 AP001784.1-201ENST00000624107 428 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AC069542.2-201ENST00000624816 216 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXA9P31269 AC125336.1-201ENST00000508893 2827 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXA9P31269 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 AC005261.6-201ENST00000623072 1387 ntBASIC5.66□□□□□ -1.5
HOXA9P31269 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
HOXA9P31269 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
HOXA9P31269 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.66□□□□□ -1.5
HOXA9P31269 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
HOXA9P31269 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.65□□□□□ -1.5
HOXA9P31269 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA9P31269 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA9P31269 OR4G1P-202ENST00000641173 1788 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA9P31269 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA9P31269 U3.10-201ENST00000364459 214 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA9P31269 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
HOXA9P31269 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXA9P31269 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXA9P31269 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXA9P31269 IGBP1P3-201ENST00000447449 1000 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXA9P31269 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXA9P31269 AZGP1P2-201ENST00000454506 345 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 AC091685.2-201ENST00000454924 864 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA9P31269 RN7SL188P-201ENST00000469842 285 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA9P31269 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA9P31269 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA9P31269 AC109464.1-201ENST00000511091 819 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXA9P31269 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.65□□□□□ -1.5
HOXA9P31269 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXA9P31269 YWHABP2-201ENST00000540201 713 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
HOXA9P31269 OR1F2P-201ENST00000570470 933 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA9P31269 AC099494.2-201ENST00000623371 978 ntBASIC5.65□□□□□ -1.5
HOXA9P31269 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA9P31269 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.65□□□□□ -1.51
HOXA9P31269 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXA9P31269 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXA9P31269 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
HOXA9P31269 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA9P31269 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA9P31269 CASC19-281ENST00000642118 1554 ntBASIC5.64□□□□□ -1.51
HOXA9P31269 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA9P31269 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms