Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 AL359976.1-201ENST00000418655 3528 ntBASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC7.35□□□□□ -1.23
CCDC39Q9UFE4 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC009501.3-201ENST00000605001 1352 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC140134.1-201ENST00000511830 3544 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 NEK2P2-201ENST00000438441 1338 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 SNORD115-48-201ENST00000364764 76 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 RNU5A-2P-201ENST00000384337 116 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 SMARCE1P6-201ENST00000398372 1216 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AL353133.1-201ENST00000407695 401 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 RNU4-22P-201ENST00000411058 166 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 CDC42P6-201ENST00000421246 576 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 RPL23AP85-201ENST00000421838 433 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AL589794.1-201ENST00000424971 390 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 FABP5P3-201ENST00000437960 408 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC073052.1-201ENST00000440417 714 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC018980.1-201ENST00000457848 862 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC112184.1-201ENST00000505179 312 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 HPRT1P1-201ENST00000509498 657 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC093281.2-201ENST00000510153 597 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC020937.1-201ENST00000519677 1013 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 OR4A42P-201ENST00000531397 938 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC005519.1-201ENST00000554490 601 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 CENPUP2-201ENST00000555897 1186 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC025283.1-201ENST00000572039 734 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 EIF1P5-201ENST00000585002 234 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC079315.1-201ENST00000602952 623 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC099785.1-201ENST00000605697 437 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 TUSC7.1-201ENST00000610969 165 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC024257.5-201ENST00000612739 531 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 IGKV2OR2-10-201ENST00000613976 311 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 FRG1HP-204ENST00000617940 757 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 AC005899.7-201ENST00000618199 588 ntBASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC7.34□□□□□ -1.23
CCDC39Q9UFE4 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC7.34□□□□□ -1.24
CCDC39Q9UFE4 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.24
CCDC39Q9UFE4 AC025470.1-201ENST00000510053 2032 ntBASIC7.34□□□□□ -1.24
CCDC39Q9UFE4 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL731532.1-201ENST00000623972 4236 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL355834.1-201ENST00000556602 3965 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 RN7SKP257-201ENST00000364525 309 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 MRPS6P2-201ENST00000381143 370 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 RNU6-354P-201ENST00000383862 107 ntBASIC7.33□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms