Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL158827.1-201ENST00000416300 391 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC017019.1-201ENST00000426129 261 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AL389925.1-201ENST00000432257 728 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 RPL31P20-201ENST00000449593 360 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 MEMO1P4-201ENST00000453590 386 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 HLA-DPA3-207ENST00000454398 229 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC105420.1-201ENST00000504389 582 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 OR5H7P-201ENST00000514084 930 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 MTND1P36-201ENST00000522384 936 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 CASP5-209ENST00000531367 879 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC074029.2-201ENST00000551045 634 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC096996.1-201ENST00000563813 325 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC090079.2-201ENST00000575289 768 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 MTND2P13-201ENST00000577438 1039 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 MIR4776-2-201ENST00000580204 80 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC007423.1-201ENST00000605009 627 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC084036.1-201ENST00000609190 508 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC007786.3-201ENST00000615154 596 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC005618.4-201ENST00000625053 554 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 MTCO1P7-201ENST00000419523 1542 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
NKX3-1Q99801 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
NKX3-1Q99801 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
NKX3-1Q99801 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
NKX3-1Q99801 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
NKX3-1Q99801 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
NKX3-1Q99801 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC006484.1-201ENST00000435086 1884 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
NKX3-1Q99801 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
NKX3-1Q99801 PWAR1-201ENST00000624188 2414 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 MRRFP1-201ENST00000435941 1675 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AL121886.1-201ENST00000358609 435 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC023490.2-201ENST00000359859 470 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 MIR365B-201ENST00000362317 111 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 RNA5SP500-201ENST00000364486 119 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 SNORA5.1-201ENST00000384275 131 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 RPS6P23-201ENST00000413224 722 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 CDY17P-201ENST00000414121 1282 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC066692.1-201ENST00000421721 457 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 BX323845.3-201ENST00000428215 527 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 EIF2S2P3-201ENST00000428356 999 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 CDY8P-201ENST00000428380 1279 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 RPL17P35-201ENST00000432217 549 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 ATP6V1E1P1-201ENST00000439215 681 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 CDY20P-201ENST00000447528 1279 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 NPM1P19-201ENST00000450070 712 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 GEMIN2P1-201ENST00000454246 752 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 CST12P-201ENST00000457644 362 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 RN7SL197P-201ENST00000466981 299 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC008147.3-201ENST00000548666 354 ntBASIC4.89□□□□□ -1.63
NKX3-1Q99801 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC4.89□□□□□ -1.63
NKX3-1Q99801 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms