Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC138907.8-201ENST00000623981 2256 ntBASIC6.49□□□□□ -1.37
HPS3Q969F9 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC6.49□□□□□ -1.37
HPS3Q969F9 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC6.49□□□□□ -1.37
HPS3Q969F9 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC6.49□□□□□ -1.37
HPS3Q969F9 AC079298.1-201ENST00000625026 1619 ntBASIC6.49□□□□□ -1.37
HPS3Q969F9 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HPS3Q969F9 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HPS3Q969F9 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HPS3Q969F9 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.49□□□□□ -1.37
HPS3Q969F9 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
HPS3Q969F9 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
HPS3Q969F9 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HPS3Q969F9 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HPS3Q969F9 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
HPS3Q969F9 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.49□□□□□ -1.37
HPS3Q969F9 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
HPS3Q969F9 FBXL21-201ENST00000297158 1305 ntBASIC6.49□□□□□ -1.37
HPS3Q969F9 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.49□□□□□ -1.37
HPS3Q969F9 AC007382.1-201ENST00000624376 2618 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
HPS3Q969F9 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.48□□□□□ -1.37
HPS3Q969F9 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.48□□□□□ -1.37
HPS3Q969F9 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.48□□□□□ -1.37
HPS3Q969F9 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.48□□□□□ -1.37
HPS3Q969F9 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
HPS3Q969F9 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 RNA5SP435-201ENST00000364044 108 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 RN7SKP128-201ENST00000364270 303 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 RNA5SP500-201ENST00000364486 119 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 AL672167.2-201ENST00000377164 879 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 RNU6-584P-201ENST00000410350 95 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC6.48□□□□□ -1.37
HPS3Q969F9 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.48□□□□□ -1.37
HPS3Q969F9 BX664727.1-201ENST00000416024 466 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC6.48□□□□□ -1.37
HPS3Q969F9 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC6.48□□□□□ -1.37
HPS3Q969F9 VN1R42P-201ENST00000424651 344 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.48□□□□□ -1.37
HPS3Q969F9 NDUFS5P5-201ENST00000437256 321 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC6.48□□□□□ -1.37
HPS3Q969F9 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.48□□□□□ -1.37
HPS3Q969F9 AC023141.8-201ENST00000442554 208 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 snoU13.29-201ENST00000459370 104 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 AC006539.1-201ENST00000481419 501 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 OR11I1P-201ENST00000486033 954 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 PRMT5P1-201ENST00000514351 598 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 RN7SKP34-201ENST00000516142 244 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.48□□□□□ -1.37
HPS3Q969F9 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.48□□□□□ -1.37
HPS3Q969F9 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.48□□□□□ -1.37
HPS3Q969F9 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC6.48□□□□□ -1.37
HPS3Q969F9 AC126615.2-201ENST00000553003 515 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.48□□□□□ -1.37
HPS3Q969F9 AC091078.2-201ENST00000557145 559 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.48□□□□□ -1.37
HPS3Q969F9 AC106730.2-201ENST00000566641 540 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 RN7SL339P-201ENST00000580597 296 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 MIR4420-201ENST00000583944 77 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC6.48□□□□□ -1.37
HPS3Q969F9 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC6.48□□□□□ -1.37
HPS3Q969F9 AC007275.1-201ENST00000621243 671 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC6.48□□□□□ -1.37
HPS3Q969F9 AP001962.1-201ENST00000624114 559 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.48□□□□□ -1.37
HPS3Q969F9 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
HPS3Q969F9 KYNUP3-201ENST00000574386 1341 ntBASIC6.48□□□□□ -1.37
HPS3Q969F9 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.47□□□□□ -1.37
HPS3Q969F9 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HPS3Q969F9 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.47□□□□□ -1.37
HPS3Q969F9 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
HPS3Q969F9 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.47□□□□□ -1.37
HPS3Q969F9 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HPS3Q969F9 AC011503.2-201ENST00000594230 1500 ntBASIC6.47□□□□□ -1.37
HPS3Q969F9 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.47□□□□□ -1.37
HPS3Q969F9 RNA5SP433-201ENST00000364491 114 ntBASIC6.47□□□□□ -1.37
HPS3Q969F9 HMGB1P10-201ENST00000395823 563 ntBASIC6.47□□□□□ -1.37
HPS3Q969F9 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
HPS3Q969F9 RN7SKP29-201ENST00000410957 272 ntBASIC6.47□□□□□ -1.37
HPS3Q969F9 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC6.47□□□□□ -1.37
HPS3Q969F9 AC115283.1-201ENST00000427353 400 ntBASIC6.47□□□□□ -1.37
HPS3Q969F9 AL590399.2-201ENST00000427536 309 ntBASIC6.47□□□□□ -1.37
HPS3Q969F9 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.47□□□□□ -1.37
HPS3Q969F9 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.47□□□□□ -1.37
HPS3Q969F9 RPL12P16-201ENST00000431098 498 ntBASIC6.47□□□□□ -1.37
HPS3Q969F9 AC069154.1-201ENST00000432914 542 ntBASIC6.47□□□□□ -1.37
HPS3Q969F9 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms