Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 RPS3AP2-201ENST00000407190 754 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 RN7SKP29-201ENST00000410957 272 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AK4P4-201ENST00000419465 646 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AL445528.1-201ENST00000426330 420 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 GAPDHP34-201ENST00000432112 823 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 CYCSP11-201ENST00000436426 315 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AL606490.8-201ENST00000441624 319 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 VN1R48P-201ENST00000448149 1036 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 RPL7L1P1-201ENST00000448259 785 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC243772.1-201ENST00000451620 410 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 FRG2FP-204ENST00000453982 852 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC084754.1-201ENST00000463466 464 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC078899.1-201ENST00000521432 1185 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC084036.1-201ENST00000609190 508 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC104307.1-201ENST00000616142 196 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 AC119674.1-220ENST00000641502 1048 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 LINC01963-201ENST00000562038 3148 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 CASC19-248ENST00000641674 1356 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 MFSD8-239ENST00000641590 2479 ntBASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.37□□□□□ -1.55
NUP54Q7Z3B4 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 OR52B3P-201ENST00000314715 928 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 BX323845.3-201ENST00000428215 527 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 FHP1-201ENST00000442741 703 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC099063.2-201ENST00000446360 662 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AL500527.1-201ENST00000448532 255 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC009963.4-201ENST00000448535 339 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 MORF4L1P4-201ENST00000450245 976 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 HMGB1P42-201ENST00000532126 553 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC090424.1-201ENST00000535243 736 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC079600.1-201ENST00000550326 297 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AL390334.1-201ENST00000556395 450 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC006272.2-201ENST00000594725 163 ntBASIC5.36□□□□□ -1.55
NUP54Q7Z3B4 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms