Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.66□□□□□ -1.5
COL4A4P53420 MIR4737-201ENST00000583979 81 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AL161616.1-201ENST00000611867 286 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AC099494.2-201ENST00000623371 978 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.66□□□□□ -1.5
COL4A4P53420 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL4A4P53420 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.65□□□□□ -1.5
COL4A4P53420 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL4A4P53420 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL4A4P53420 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL4A4P53420 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL4A4P53420 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL4A4P53420 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL4A4P53420 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL4A4P53420 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.65□□□□□ -1.51
COL4A4P53420 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL4A4P53420 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL4A4P53420 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
COL4A4P53420 AC119751.6-201ENST00000416712 186 ntBASIC5.65□□□□□ -1.51
COL4A4P53420 AC007064.3-201ENST00000422608 359 ntBASIC5.65□□□□□ -1.51
COL4A4P53420 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.65□□□□□ -1.51
COL4A4P53420 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.65□□□□□ -1.51
COL4A4P53420 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.65□□□□□ -1.51
COL4A4P53420 AC073465.2-201ENST00000440938 498 ntBASIC5.65□□□□□ -1.51
COL4A4P53420 RN7SL814P-201ENST00000487715 300 ntBASIC5.65□□□□□ -1.51
COL4A4P53420 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL4A4P53420 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.65□□□□□ -1.51
COL4A4P53420 IMPA1P1-201ENST00000510718 842 ntBASIC5.65□□□□□ -1.51
COL4A4P53420 RNA5SP116-201ENST00000516132 98 ntBASIC5.65□□□□□ -1.51
COL4A4P53420 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
COL4A4P53420 AC084824.2-201ENST00000548906 345 ntBASIC5.65□□□□□ -1.51
COL4A4P53420 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.65□□□□□ -1.51
COL4A4P53420 AC244107.2-201ENST00000611773 76 ntBASIC5.65□□□□□ -1.51
COL4A4P53420 AC007786.3-201ENST00000615154 596 ntBASIC5.65□□□□□ -1.51
COL4A4P53420 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
COL4A4P53420 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL4A4P53420 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL4A4P53420 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 AP000547.3-204ENST00000588548 2523 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 AC006600.2-201ENST00000624834 2506 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
COL4A4P53420 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.64□□□□□ -1.51
COL4A4P53420 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.64□□□□□ -1.51
COL4A4P53420 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL4A4P53420 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 RPL32P3-201ENST00000359025 275 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 Y_RNA.126-201ENST00000363382 111 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 RNA5SP332-201ENST00000391063 115 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 AL078599.1-201ENST00000402075 293 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 RPS16P5-201ENST00000406501 404 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 PRPF38AP2-201ENST00000438179 851 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 AC112498.1-201ENST00000444401 332 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 AC023271.1-201ENST00000445936 1090 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 AC058823.1-201ENST00000485315 474 ntBASIC5.64□□□□□ -1.51
COL4A4P53420 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC5.64□□□□□ -1.51
COL4A4P53420 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.64□□□□□ -1.51
COL4A4P53420 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.64□□□□□ -1.51
COL4A4P53420 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.64□□□□□ -1.51
COL4A4P53420 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.64□□□□□ -1.51
COL4A4P53420 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.64□□□□□ -1.51
COL4A4P53420 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.64□□□□□ -1.51
COL4A4P53420 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.64□□□□□ -1.51
COL4A4P53420 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC5.64□□□□□ -1.51
COL4A4P53420 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL4A4P53420 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.64□□□□□ -1.51
COL4A4P53420 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL4A4P53420 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.64□□□□□ -1.51
COL4A4P53420 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.64□□□□□ -1.51
COL4A4P53420 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
COL4A4P53420 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL4A4P53420 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL4A4P53420 DNAJC19P7-201ENST00000428811 344 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 HSPD1P12-201ENST00000429127 1069 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.63□□□□□ -1.51
COL4A4P53420 CYCSP42-201ENST00000450823 238 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 RPL7AP28-201ENST00000464513 571 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 RPS23P7-201ENST00000466210 444 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 AC007537.2-201ENST00000472093 511 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 AC092754.1-201ENST00000472975 479 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.63□□□□□ -1.51
COL4A4P53420 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.63□□□□□ -1.51
COL4A4P53420 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.63□□□□□ -1.51
COL4A4P53420 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.63□□□□□ -1.51
COL4A4P53420 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
COL4A4P53420 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.63□□□□□ -1.51
COL4A4P53420 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL4A4P53420 AC007159.1-201ENST00000566529 4706 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 BX284613.1-201ENST00000452221 1641 ntBASIC5.63□□□□□ -1.51
COL4A4P53420 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL4A4P53420 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms