Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC7.01□□□□□ -1.29
HOXC9P31274 AC111000.5-201ENST00000506559 1178 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC7.01□□□□□ -1.29
HOXC9P31274 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HOXC9P31274 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC7.01□□□□□ -1.29
HOXC9P31274 HIGD1AP5-201ENST00000529959 259 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 AC008033.2-201ENST00000542626 177 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC7.01□□□□□ -1.29
HOXC9P31274 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC7.01□□□□□ -1.29
HOXC9P31274 AC005084.1-201ENST00000605160 304 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 AC015712.7-201ENST00000615211 635 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
HOXC9P31274 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HOXC9P31274 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC7.01□□□□□ -1.29
HOXC9P31274 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC7.01□□□□□ -1.29
HOXC9P31274 AC020656.2-201ENST00000613291 5309 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC7.01□□□□□ -1.29
HOXC9P31274 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HOXC9P31274 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HOXC9P31274 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HOXC9P31274 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC7.01□□□□□ -1.29
HOXC9P31274 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HOXC9P31274 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC7.01□□□□□ -1.29
HOXC9P31274 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC7.01□□□□□ -1.29
HOXC9P31274 ATP5A1P1-201ENST00000454088 1321 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
HOXC9P31274 NXF4-202ENST00000416098 1465 ntBASIC7□□□□□ -1.29
HOXC9P31274 CASC19-221ENST00000641309 1382 ntBASIC7□□□□□ -1.29
HOXC9P31274 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC7□□□□□ -1.29
HOXC9P31274 AC003973.3-201ENST00000624863 2822 ntBASIC7□□□□□ -1.29
HOXC9P31274 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC7□□□□□ -1.29
HOXC9P31274 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC7□□□□□ -1.29
HOXC9P31274 RNVU1-6-201ENST00000364688 164 ntBASIC7□□□□□ -1.29
HOXC9P31274 RNA5SP90-201ENST00000364801 99 ntBASIC7□□□□□ -1.29
HOXC9P31274 CYB5AP4-201ENST00000396692 399 ntBASIC7□□□□□ -1.29
HOXC9P31274 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC7□□□□□ -1.29
HOXC9P31274 RPL26P29-201ENST00000415623 438 ntBASIC7□□□□□ -1.29
HOXC9P31274 OR2AM1P-201ENST00000422137 422 ntBASIC7□□□□□ -1.29
HOXC9P31274 AL590399.2-201ENST00000427536 309 ntBASIC7□□□□□ -1.29
HOXC9P31274 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC7□□□□□ -1.29
HOXC9P31274 KNOP1P3-201ENST00000446933 426 ntBASIC7□□□□□ -1.29
HOXC9P31274 NDUFA5P8-201ENST00000449019 346 ntBASIC7□□□□□ -1.29
HOXC9P31274 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC7□□□□□ -1.29
HOXC9P31274 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC7□□□□□ -1.29
HOXC9P31274 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC7□□□□□ -1.29
HOXC9P31274 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC7□□□□□ -1.29
HOXC9P31274 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC7□□□□□ -1.29
HOXC9P31274 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC7□□□□□ -1.29
HOXC9P31274 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC7□□□□□ -1.29
HOXC9P31274 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC7□□□□□ -1.29
HOXC9P31274 AP005131.7-201ENST00000610087 611 ntBASIC7□□□□□ -1.29
HOXC9P31274 EIF3FP1-201ENST00000613970 806 ntBASIC7□□□□□ -1.29
HOXC9P31274 uc_338.18-201ENST00000615451 175 ntBASIC7□□□□□ -1.29
HOXC9P31274 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HOXC9P31274 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC7□□□□□ -1.29
HOXC9P31274 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC7□□□□□ -1.29
HOXC9P31274 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
HOXC9P31274 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC7□□□□□ -1.29
HOXC9P31274 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC7□□□□□ -1.29
HOXC9P31274 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC7□□□□□ -1.29
HOXC9P31274 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HOXC9P31274 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC7□□□□□ -1.29
HOXC9P31274 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
HOXC9P31274 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HOXC9P31274 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
HOXC9P31274 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HOXC9P31274 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HOXC9P31274 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.99□□□□□ -1.29
HOXC9P31274 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.99□□□□□ -1.29
HOXC9P31274 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 AL591135.1-201ENST00000401578 5914 ntBASIC6.99□□□□□ -1.29
HOXC9P31274 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HOXC9P31274 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 GNAS-202ENST00000306090 477 ntTSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HOXC9P31274 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC6.99□□□□□ -1.29
HOXC9P31274 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC6.99□□□□□ -1.29
HOXC9P31274 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.99□□□□□ -1.29
HOXC9P31274 RPL7P16-201ENST00000479738 738 ntBASIC6.99□□□□□ -1.29
HOXC9P31274 HMGN2P25-201ENST00000486956 268 ntBASIC6.99□□□□□ -1.29
HOXC9P31274 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.99□□□□□ -1.29
HOXC9P31274 AC084824.2-201ENST00000548906 345 ntBASIC6.99□□□□□ -1.29
HOXC9P31274 AC137768.1-201ENST00000549998 553 ntBASIC6.99□□□□□ -1.29
HOXC9P31274 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC6.99□□□□□ -1.29
HOXC9P31274 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 AC073575.2-201ENST00000614212 627 ntBASIC6.99□□□□□ -1.29
HOXC9P31274 AC099654.6-201ENST00000636487 512 ntBASIC6.99□□□□□ -1.29
HOXC9P31274 AC135068.12-201ENST00000637370 931 ntBASIC6.99□□□□□ -1.29
HOXC9P31274 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.99□□□□□ -1.29
HOXC9P31274 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HOXC9P31274 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HOXC9P31274 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.99□□□□□ -1.29
HOXC9P31274 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
HOXC9P31274 AL137141.1-201ENST00000624622 4836 ntBASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms