Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.15□□□□□ -1.59
COL5A1P20908 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL5A1P20908 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL5A1P20908 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 OR5M12P-201ENST00000423388 929 ntBASIC5.14□□□□□ -1.59
COL5A1P20908 USP9YP9-201ENST00000429406 715 ntBASIC5.14□□□□□ -1.59
COL5A1P20908 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.14□□□□□ -1.59
COL5A1P20908 AL161747.1-201ENST00000480068 358 ntBASIC5.14□□□□□ -1.59
COL5A1P20908 AC021006.3-201ENST00000530771 192 ntBASIC5.14□□□□□ -1.59
COL5A1P20908 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A1P20908 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 AP000769.2-201ENST00000602344 396 ntBASIC5.14□□□□□ -1.59
COL5A1P20908 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A1P20908 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A1P20908 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.14□□□□□ -1.59
COL5A1P20908 AC007996.1-201ENST00000620414 2821 ntBASIC5.14□□□□□ -1.59
COL5A1P20908 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.14□□□□□ -1.59
COL5A1P20908 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A1P20908 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.14□□□□□ -1.59
COL5A1P20908 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.14□□□□□ -1.59
COL5A1P20908 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
COL5A1P20908 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
COL5A1P20908 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL5A1P20908 RNA5SP123-201ENST00000363244 119 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 RNA5SP455-201ENST00000365190 119 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL5A1P20908 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 RPL12P17-201ENST00000432393 498 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC109464.1-201ENST00000511091 819 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 SEPT10P1-201ENST00000517342 1162 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 MIR6133-201ENST00000617057 108 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.13□□□□□ -1.59
COL5A1P20908 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A1P20908 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.13□□□□□ -1.59
COL5A1P20908 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A1P20908 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A1P20908 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A1P20908 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC079097.1-201ENST00000512187 1399 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.13□□□□□ -1.59
COL5A1P20908 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A1P20908 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A1P20908 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL5A1P20908 Y_RNA.126-201ENST00000363382 111 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 U3.10-201ENST00000364459 214 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 SNORA51.8-201ENST00000384234 132 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC008072.1-201ENST00000434254 824 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.13□□□□□ -1.59
COL5A1P20908 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 DPPA3P2-201ENST00000553589 478 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.13□□□□□ -1.59
COL5A1P20908 AC020910.2-201ENST00000603635 610 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 AC005252.1-201ENST00000604518 1063 ntBASIC5.13□□□□□ -1.59
COL5A1P20908 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.13□□□□□ -1.59
COL5A1P20908 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
COL5A1P20908 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.12□□□□□ -1.59
COL5A1P20908 RPL11P3-201ENST00000395256 523 ntBASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms