Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
DEPDC4Q8N2C3 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 DYNC1I2P1-201ENST00000435916 1838 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 Z93929.1-201ENST00000418200 1475 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 SCOC-AS1-201ENST00000512692 1987 ntTSL 2 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ERV3-1-201ENST00000394323 2719 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 STX18-AS1-206ENST00000608184 3047 ntTSL 3 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 LINC00955-202ENST00000514422 1502 ntTSL 4 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 GAPDHP24-201ENST00000328713 983 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 Y_RNA.1-201ENST00000352915 104 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RNU6-1085P-201ENST00000363576 107 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 Y_RNA.279-201ENST00000364763 95 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ATF3-204ENST00000366983 858 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RACK1-201ENST00000376817 965 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 SNORA35-201ENST00000386104 128 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 SNORD115.1-201ENST00000391109 76 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RPS3AP36-201ENST00000398190 775 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL136131.1-201ENST00000406079 803 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL356776.1-201ENST00000406574 447 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL356432.2-201ENST00000407841 422 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RN7SKP261-201ENST00000410948 278 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC114760.1-201ENST00000420310 652 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 NANOGP6-201ENST00000429190 847 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL358934.1-201ENST00000432346 324 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RPL12P4-201ENST00000432629 497 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 SNRPEP7-201ENST00000438350 220 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL157414.2-201ENST00000442780 377 ntTSL 3 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ARL2BPP7-201ENST00000446421 490 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ELOBP1-201ENST00000447693 357 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 BX322784.1-201ENST00000455793 1077 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RN7SL854P-201ENST00000459767 295 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RN7SL505P-201ENST00000482644 293 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RPL12P32-201ENST00000484010 494 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RN7SL37P-201ENST00000490461 307 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC018710.1-201ENST00000506509 158 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC022296.2-201ENST00000512424 202 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 SNORA70.23-201ENST00000517218 151 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 IGHV7-40-201ENST00000520963 296 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ARL2BPP5-201ENST00000523141 481 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AP000619.1-201ENST00000540293 1000 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 NMNAT1P1-201ENST00000554095 876 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL512360.1-201ENST00000555346 234 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 HNRNPA1P71-201ENST00000559135 950 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 BNIP3P11-201ENST00000603878 563 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 TTC23L-208ENST00000610313 973 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC243773.3-201ENST00000613270 256 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ST7-OT4_3.1-201ENST00000615542 293 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC009233.1-201ENST00000616477 371 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC010338.1-201ENST00000621823 717 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AP002505.2-201ENST00000623585 696 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC005753.1-201ENST00000623837 618 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 CDRT1-208ENST00000630868 794 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 AC016251.2-201ENST00000623393 3089 ntBASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ANXA2-202ENST00000396024 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 EYA4-213ENST00000531901 2892 ntAPPRIS ALT2 TSL 2 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 ARNTL2-203ENST00000311001 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC7.24□□□□□ -1.25
DEPDC4Q8N2C3 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC7.23□□□□□ -1.25
DEPDC4Q8N2C3 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
DEPDC4Q8N2C3 MBTPS2-201ENST00000365779 4457 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
DEPDC4Q8N2C3 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
DEPDC4Q8N2C3 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC7.23□□□□□ -1.25
DEPDC4Q8N2C3 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
DEPDC4Q8N2C3 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms