Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
HSPG2P98160 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC3.16□□□□□ -1.9
HSPG2P98160 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
HSPG2P98160 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HSPG2P98160 AC114755.5-201ENST00000447760 831 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 AC008958.1-201ENST00000511047 682 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HSPG2P98160 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC3.16□□□□□ -1.9
HSPG2P98160 AC008782.1-201ENST00000603386 430 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AC105254.2-201ENST00000603636 436 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC3.16□□□□□ -1.9
HSPG2P98160 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
HSPG2P98160 NSD2-207ENST00000398261 8390 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 RNU1-74P-201ENST00000384108 171 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 ATP5F1P2-201ENST00000398143 760 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 RNA5SP317-201ENST00000410176 116 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 RNA5SP311-201ENST00000411290 116 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 RPS27AP12-201ENST00000429552 465 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AL451136.1-201ENST00000435399 325 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 RPS29P9-201ENST00000440360 171 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.16□□□□□ -1.9
HSPG2P98160 RN7SL319P-201ENST00000480656 221 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 RNA5SP315-201ENST00000516340 116 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 RNA5SP312-201ENST00000517068 116 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC3.16□□□□□ -1.9
HSPG2P98160 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC3.16□□□□□ -1.9
HSPG2P98160 WDR87-201ENST00000303868 8847 ntAPPRIS P3 TSL 2 BASIC3.16□□□□□ -1.9
HSPG2P98160 AC073365.1-203ENST00000641055 1992 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 EEF1A1P33-201ENST00000554413 1362 ntBASIC3.15□□□□□ -1.9
HSPG2P98160 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HSPG2P98160 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
HSPG2P98160 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC3.15□□□□□ -1.9
HSPG2P98160 RPL23AP59-201ENST00000399415 461 ntBASIC3.15□□□□□ -1.9
HSPG2P98160 CYCSP19-201ENST00000411715 316 ntBASIC3.15□□□□□ -1.9
HSPG2P98160 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.15□□□□□ -1.9
HSPG2P98160 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC3.15□□□□□ -1.9
HSPG2P98160 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC3.15□□□□□ -1.9
HSPG2P98160 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC3.15□□□□□ -1.9
HSPG2P98160 SNX18P1Y-201ENST00000616231 511 ntBASIC3.15□□□□□ -1.9
HSPG2P98160 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC3.15□□□□□ -1.9
HSPG2P98160 MYT1L-202ENST00000399161 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
HSPG2P98160 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HSPG2P98160 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC3.15□□□□□ -1.9
HSPG2P98160 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HSPG2P98160 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HSPG2P98160 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
HSPG2P98160 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HSPG2P98160 AC068446.1-201ENST00000556425 1549 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC3.15□□□□□ -1.91
HSPG2P98160 RIMKLBP2-201ENST00000424737 654 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.15□□□□□ -1.91
HSPG2P98160 RPL23AP93-201ENST00000440847 484 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 ATP5LP5-201ENST00000483050 299 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.15□□□□□ -1.91
HSPG2P98160 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC3.15□□□□□ -1.91
HSPG2P98160 AC025884.1-201ENST00000556034 378 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 AC105129.1-201ENST00000560250 297 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC3.15□□□□□ -1.91
HSPG2P98160 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC3.15□□□□□ -1.91
HSPG2P98160 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.15□□□□□ -1.91
HSPG2P98160 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC3.15□□□□□ -1.91
HSPG2P98160 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
HSPG2P98160 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HSPG2P98160 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HSPG2P98160 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HSPG2P98160 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HSPG2P98160 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HSPG2P98160 SMG1P7-201ENST00000565246 2704 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 CAST-222ENST00000508579 1758 ntTSL 2 BASIC3.15□□□□□ -1.91
HSPG2P98160 RNU1-136P-201ENST00000384181 164 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC3.15□□□□□ -1.91
HSPG2P98160 SNORA11.1-201ENST00000408133 129 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 AK3P5-201ENST00000432033 519 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 CYCSP11-201ENST00000436426 315 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 RN7SL542P-201ENST00000467147 294 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 TRBV5-2-201ENST00000489095 273 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 RN7SKP98-201ENST00000517070 156 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.15□□□□□ -1.91
HSPG2P98160 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC3.15□□□□□ -1.91
HSPG2P98160 KPNA2P3-201ENST00000584190 848 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 MIR3138-201ENST00000585238 82 ntBASIC3.15□□□□□ -1.91
HSPG2P98160 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 1978.1 ms