Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC116917.1-201ENST00000520558 305 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 IGHVII-78-1-201ENST00000521105 269 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 AP000889.1-201ENST00000530968 660 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 MIR4800-201ENST00000537353 80 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.7□□□□□ -1.34
COL8A1P27658 AL390334.1-201ENST00000556395 450 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 LINC02289-202ENST00000556781 861 ntTSL 3 BASIC6.7□□□□□ -1.34
COL8A1P27658 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.7□□□□□ -1.34
COL8A1P27658 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC007448.1-201ENST00000582714 234 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 MIR4307-201ENST00000582802 84 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 AC011921.2-201ENST00000589465 152 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC012507.3-201ENST00000603556 477 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC6.7□□□□□ -1.34
COL8A1P27658 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 STMN1P1-201ENST00000617809 440 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 AC010332.1-201ENST00000620439 97 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 AC139792.3-201ENST00000623525 224 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 CDH18-203ENST00000502796 2386 ntTSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 NLRP5-203ENST00000621651 3885 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
COL8A1P27658 KCTD6-201ENST00000355076 2425 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 TTC33-201ENST00000337702 2612 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 XIRP2-206ENST00000409728 3391 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 NASP-201ENST00000350030 3207 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 NTRK3-201ENST00000317501 3826 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 MS4A6A-203ENST00000426738 1736 ntTSL 5 BASIC6.7□□□□□ -1.34
COL8A1P27658 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 AC104964.2-201ENST00000562242 4641 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC127070.5-201ENST00000623177 2104 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 LINC00663-203ENST00000586885 2546 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 MXRA7-207ENST00000592148 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 ACSL1-211ENST00000515030 3948 ntAPPRIS P3 TSL 5 BASIC6.69□□□□□ -1.34
COL8A1P27658 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.69□□□□□ -1.34
COL8A1P27658 PPBPP2-201ENST00000513150 1362 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC6.69□□□□□ -1.34
COL8A1P27658 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 LINC00598-208ENST00000617777 2551 ntTSL 2 BASIC6.69□□□□□ -1.34
COL8A1P27658 RAB3IP-215ENST00000551641 2840 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 ZNF19-210ENST00000567225 2838 ntTSL 3 BASIC6.69□□□□□ -1.34
COL8A1P27658 PSMC2-201ENST00000292644 2637 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 ZNF846-202ENST00000586293 1621 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC6.69□□□□□ -1.34
COL8A1P27658 THAP12P6-201ENST00000431978 2310 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 AL157777.2-201ENST00000258070 137 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
COL8A1P27658 RN7SKP171-201ENST00000364417 303 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 SNORA22B-201ENST00000383876 138 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 Y_RNA.387-201ENST00000383918 102 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 RNU6-209P-201ENST00000384118 107 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 Y_RNA.445-201ENST00000384168 102 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
COL8A1P27658 YWHAZP6-201ENST00000399764 738 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 PEX12P1-201ENST00000400284 1048 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 RN7SKP148-201ENST00000410179 275 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 FDPSP1-201ENST00000424976 1071 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC6.69□□□□□ -1.34
COL8A1P27658 FAM96AP1-201ENST00000430879 482 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.69□□□□□ -1.34
COL8A1P27658 AL355483.4-201ENST00000432653 470 ntTSL 3 BASIC6.69□□□□□ -1.34
COL8A1P27658 FCF1P1-201ENST00000432690 571 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC6.69□□□□□ -1.34
COL8A1P27658 RPL29P7-201ENST00000440227 457 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 AC123904.1-201ENST00000441072 368 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC6.69□□□□□ -1.34
COL8A1P27658 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.69□□□□□ -1.34
COL8A1P27658 RN7SL149P-201ENST00000465197 281 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 OR9A3P-202ENST00000485185 878 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 THAP6-203ENST00000502620 582 ntTSL 3 BASIC6.69□□□□□ -1.34
COL8A1P27658 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC6.69□□□□□ -1.34
COL8A1P27658 LINC02099-202ENST00000522158 2980 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 CA1-215ENST00000522389 551 ntTSL 3 BASIC6.69□□□□□ -1.34
COL8A1P27658 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC6.69□□□□□ -1.34
COL8A1P27658 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC6.69□□□□□ -1.34
COL8A1P27658 AP003122.3-201ENST00000526316 255 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL8A1P27658 AC087276.1-201ENST00000529659 480 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC6.69□□□□□ -1.34
COL8A1P27658 NELL2-211ENST00000548826 559 ntTSL 2 BASIC6.69□□□□□ -1.34
COL8A1P27658 AL161670.1-201ENST00000554348 137 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 UBE2Q2P11-201ENST00000559691 205 ntBASIC6.69□□□□□ -1.34
COL8A1P27658 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms