Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 PDXDC1-203ENST00000450288 4171 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 ASAP1-IT2-201ENST00000626977 2031 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 CDC27-201ENST00000066544 5801 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 OCM-201ENST00000242104 695 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 FAM32BP-201ENST00000344033 333 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 CENPW-202ENST00000368326 443 ntTSL 2 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC003080.1-201ENST00000413552 767 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 PROX1-AS1-201ENST00000413560 496 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 MTCO3P19-201ENST00000415864 321 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC018865.2-201ENST00000423631 129 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 RPSAP10-201ENST00000426103 878 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 OR5M13P-201ENST00000433944 937 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 ASS1P5-201ENST00000435496 1239 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 DNAJC19P8-201ENST00000452887 259 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 RPL30P15-201ENST00000457129 321 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 RPL34P33-201ENST00000486062 334 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 LINC02016-201ENST00000488425 927 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 RN7SL864P-201ENST00000493457 285 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC083902.1-201ENST00000508578 359 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC012560.1-203ENST00000510550 595 ntTSL 4 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 TMEM248P1-201ENST00000510579 951 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC108120.2-201ENST00000512973 294 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC091987.1-202ENST00000522464 789 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC006581.1-201ENST00000545706 496 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 CYP4A44P-201ENST00000569984 154 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC068152.1-202ENST00000571901 808 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 PROX1-AS1-208ENST00000601335 691 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AL021878.2-201ENST00000602718 399 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC010719.1-201ENST00000602992 747 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AL592227.1-201ENST00000614748 126 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 NAA40-202ENST00000377793 3664 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 KIF6-208ENST00000538893 2386 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 PIGN-231ENST00000639174 4095 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 LRRC31-204ENST00000523069 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 CHD2-212ENST00000627622 1740 ntTSL 2 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 SKA2-201ENST00000330137 2798 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 SOX6-210ENST00000528252 2707 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 GPX5-201ENST00000412168 1540 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 DBF4P1-201ENST00000412976 1892 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 ABCF2P1-201ENST00000465687 1867 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 CCDC77-203ENST00000422000 2338 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 LMLN-202ENST00000332636 1812 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 FBXO30-201ENST00000237281 9009 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 CEACAM5-210ENST00000617332 2228 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 CD86-201ENST00000264468 2634 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 AC027279.1-201ENST00000568885 4284 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 NTRK3-201ENST00000317501 3826 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 RNU6-1339P-201ENST00000363574 91 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 AC073621.2-201ENST00000381380 1024 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 RNU6-746P-201ENST00000384112 109 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 Y_RNA.515-201ENST00000384535 112 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 KCNAB1-202ENST00000389634 1119 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 HIST1H2BPS2-201ENST00000402707 340 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 AC092745.2-202ENST00000411880 369 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 OR51A3P-201ENST00000413596 924 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 SMIM12-201ENST00000417239 684 ntAPPRIS P1 TSL 3 BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 RBMY2QP-201ENST00000429799 1147 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 AL354761.1-201ENST00000434190 526 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 AL161722.2-201ENST00000434731 981 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 RPL21P88-201ENST00000436649 436 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 AL355149.1-201ENST00000438396 882 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 TVP23CP1-201ENST00000450317 639 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 RPSAP64-201ENST00000451820 336 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 OR5S1P-201ENST00000453063 951 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 AC008571.1-201ENST00000467232 300 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 RPL22P13-201ENST00000493291 347 ntBASIC8.13□□□□□ -1.11
VPS9D1Q9Y2B5 AC027338.2-201ENST00000504382 526 ntBASIC8.13□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms