Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
HSPG2P98160 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 SNORD46.1-201ENST00000364139 104 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 CEACAMP8-201ENST00000413902 580 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 RPL34P6-201ENST00000432390 345 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 AC137627.1-201ENST00000545761 289 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 MIR3200-201ENST00000580767 85 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC3.17□□□□□ -1.9
HSPG2P98160 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 AC024220.1-201ENST00000603675 484 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 AL445567.2-201ENST00000618935 498 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 GFOD1-202ENST00000379284 8061 ntTSL 2 BASIC3.17□□□□□ -1.9
HSPG2P98160 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC3.17□□□□□ -1.9
HSPG2P98160 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC3.17□□□□□ -1.9
HSPG2P98160 MRPS21P2-201ENST00000424704 264 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 VN1R21P-201ENST00000426703 765 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC3.17□□□□□ -1.9
HSPG2P98160 AC067852.5-201ENST00000589299 310 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 FRAS1-201ENST00000325942 7142 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 AC003973.3-201ENST00000624863 2822 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 SAMMSON-226ENST00000642089 1582 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 RNA5SP428-201ENST00000365129 132 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.17□□□□□ -1.9
HSPG2P98160 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 AC073358.1-201ENST00000505671 684 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.17□□□□□ -1.9
HSPG2P98160 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC3.17□□□□□ -1.9
HSPG2P98160 AL161756.2-201ENST00000604597 246 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 MTCO1P15-201ENST00000529569 1526 ntBASIC3.17□□□□□ -1.9
HSPG2P98160 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HSPG2P98160 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC3.17□□□□□ -1.9
HSPG2P98160 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC3.17□□□□□ -1.9
HSPG2P98160 SNORA70C-201ENST00000384538 135 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AMZ2P2-201ENST00000406819 1057 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC3.16□□□□□ -1.9
HSPG2P98160 snoU13.24-201ENST00000458998 104 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AC020890.1-201ENST00000491837 504 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 SCARNA20.4-201ENST00000516969 131 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AL049779.3-201ENST00000557141 606 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.16□□□□□ -1.9
HSPG2P98160 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC3.16□□□□□ -1.9
HSPG2P98160 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 LINC02210-213ENST00000591271 9678 ntTSL 3 BASIC3.16□□□□□ -1.9
HSPG2P98160 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 SV2C-202ENST00000502798 11035 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 SLIT3-202ENST00000404867 8903 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 PRDM10-201ENST00000304538 5817 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 ZEB2-246ENST00000638128 8932 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HSPG2P98160 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
HSPG2P98160 MIR298-201ENST00000401212 88 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 AP002530.1-201ENST00000405705 684 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC3.16□□□□□ -1.9
HSPG2P98160 RPS4XP16-201ENST00000427198 791 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 TCEA1P1-201ENST00000449716 880 ntBASIC3.16□□□□□ -1.9
HSPG2P98160 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC3.16□□□□□ -1.9
HSPG2P98160 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC3.16□□□□□ -1.9
HSPG2P98160 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms