Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 CR382285.2-201ENST00000624662 1495 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA1P49639 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA1P49639 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA1P49639 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HOXA1P49639 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HOXA1P49639 RNA5SP346-201ENST00000363541 121 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 RNU6-609P-201ENST00000365459 107 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 MIR138-2-201ENST00000384916 84 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 Z86062.1-201ENST00000406773 777 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AL033519.1-201ENST00000407266 307 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 RNU2-18P-201ENST00000411224 162 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA1P49639 RANP4-201ENST00000413361 655 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 RPL21P50-201ENST00000417698 477 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AC006509.1-201ENST00000420788 634 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC4.88□□□□□ -1.63
HOXA1P49639 AL512637.2-201ENST00000431287 1256 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA1P49639 AL450263.2-201ENST00000439400 589 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AL645931.1-201ENST00000439737 410 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 CXCR2P1-202ENST00000443392 1074 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 POU5F1P5-201ENST00000445059 658 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC4.88□□□□□ -1.63
HOXA1P49639 AC006326.1-201ENST00000445465 787 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AC073909.1-201ENST00000447112 999 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 RPS6P2-201ENST00000454208 705 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA1P49639 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA1P49639 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.88□□□□□ -1.63
HOXA1P49639 RPL21P6-201ENST00000479171 504 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AC079080.1-201ENST00000479841 822 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 PFN2-209ENST00000481275 560 ntTSL 4 BASIC4.88□□□□□ -1.63
HOXA1P49639 RN7SL655P-201ENST00000486087 298 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA1P49639 HMGB1P3-201ENST00000502802 616 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AC093770.1-201ENST00000511559 571 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA1P49639 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 AC034244.2-201ENST00000514668 858 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 SCARNA1-201ENST00000517138 166 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 HMGB1P19-201ENST00000517578 577 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA1P49639 AC104115.2-201ENST00000523026 687 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 IGKV2-4-201ENST00000523070 340 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 SOX5P1-201ENST00000524155 1127 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 NPIPB14P-203ENST00000532298 987 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AP002373.2-201ENST00000541631 1060 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA1P49639 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.88□□□□□ -1.63
HOXA1P49639 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA1P49639 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA1P49639 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA1P49639 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA1P49639 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.88□□□□□ -1.63
HOXA1P49639 AC073333.2-201ENST00000603589 769 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AC008555.7-201ENST00000605008 583 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AC067838.1-201ENST00000606064 577 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AC022106.1-201ENST00000612834 766 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 RN7SL261P-201ENST00000613441 282 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 MIR1264-201ENST00000616374 69 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA1P49639 AL645927.2-201ENST00000618350 349 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 MIR6811-201ENST00000620409 58 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 AC007683.2-201ENST00000624681 714 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA1P49639 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA1P49639 AL445984.1-201ENST00000637834 659 ntBASIC4.88□□□□□ -1.63
HOXA1P49639 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
HOXA1P49639 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA1P49639 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA1P49639 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA1P49639 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
HOXA1P49639 MTCO1P15-201ENST00000529569 1526 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 AC011447.7-201ENST00000624228 1590 ntBASIC4.87□□□□□ -1.63
HOXA1P49639 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
HOXA1P49639 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA1P49639 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXA1P49639 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA1P49639 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms