Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC6.85□□□□□ -1.31
COL18A1P39060 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
COL18A1P39060 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL18A1P39060 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
COL18A1P39060 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
COL18A1P39060 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.85□□□□□ -1.31
COL18A1P39060 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.85□□□□□ -1.31
COL18A1P39060 HSPD1P12-201ENST00000429127 1069 ntBASIC6.85□□□□□ -1.31
COL18A1P39060 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC6.85□□□□□ -1.31
COL18A1P39060 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.85□□□□□ -1.31
COL18A1P39060 RPL7P40-201ENST00000481703 745 ntBASIC6.85□□□□□ -1.31
COL18A1P39060 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.85□□□□□ -1.31
COL18A1P39060 RN7SKP260-201ENST00000516907 149 ntBASIC6.85□□□□□ -1.31
COL18A1P39060 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.85□□□□□ -1.31
COL18A1P39060 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.85□□□□□ -1.31
COL18A1P39060 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC6.85□□□□□ -1.31
COL18A1P39060 CR381572.2-201ENST00000624852 397 ntBASIC6.85□□□□□ -1.31
COL18A1P39060 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC6.85□□□□□ -1.31
COL18A1P39060 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL18A1P39060 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.84□□□□□ -1.31
COL18A1P39060 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.84□□□□□ -1.31
COL18A1P39060 AC016251.2-201ENST00000623393 3089 ntBASIC6.84□□□□□ -1.31
COL18A1P39060 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.84□□□□□ -1.31
COL18A1P39060 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.84□□□□□ -1.31
COL18A1P39060 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL18A1P39060 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
COL18A1P39060 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.84□□□□□ -1.31
COL18A1P39060 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
COL18A1P39060 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.84□□□□□ -1.31
COL18A1P39060 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL18A1P39060 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
COL18A1P39060 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.84□□□□□ -1.31
COL18A1P39060 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL18A1P39060 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
COL18A1P39060 SNORA77-201ENST00000408716 125 ntBASIC6.84□□□□□ -1.31
COL18A1P39060 RN7SKP114-201ENST00000410327 279 ntBASIC6.84□□□□□ -1.31
COL18A1P39060 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.84□□□□□ -1.31
COL18A1P39060 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL18A1P39060 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.84□□□□□ -1.31
COL18A1P39060 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.84□□□□□ -1.31
COL18A1P39060 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.84□□□□□ -1.31
COL18A1P39060 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.84□□□□□ -1.31
COL18A1P39060 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL18A1P39060 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL18A1P39060 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL18A1P39060 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.32
COL18A1P39060 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL18A1P39060 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL18A1P39060 USP8-204ENST00000425032 3559 ntTSL 2 BASIC6.83□□□□□ -1.32
COL18A1P39060 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
COL18A1P39060 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC6.83□□□□□ -1.32
COL18A1P39060 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
COL18A1P39060 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.83□□□□□ -1.32
COL18A1P39060 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 SNORA66-201ENST00000384792 133 ntBASIC6.83□□□□□ -1.32
COL18A1P39060 AL161722.2-201ENST00000434731 981 ntBASIC6.83□□□□□ -1.32
COL18A1P39060 OR52J1P-201ENST00000450596 932 ntBASIC6.83□□□□□ -1.32
COL18A1P39060 NUTF2P7-201ENST00000453086 375 ntBASIC6.83□□□□□ -1.32
COL18A1P39060 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.83□□□□□ -1.32
COL18A1P39060 ATP5J2P6-201ENST00000565203 266 ntBASIC6.83□□□□□ -1.32
COL18A1P39060 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.83□□□□□ -1.32
COL18A1P39060 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.83□□□□□ -1.32
COL18A1P39060 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.83□□□□□ -1.32
COL18A1P39060 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL18A1P39060 AC015799.1-201ENST00000622996 3122 ntBASIC6.83□□□□□ -1.32
COL18A1P39060 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
COL18A1P39060 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.82□□□□□ -1.32
COL18A1P39060 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 RNA5SP191-201ENST00000362585 102 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 RSU1P3-201ENST00000412878 835 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 COX6CP17-201ENST00000421389 185 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 AC009963.2-201ENST00000453431 138 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.82□□□□□ -1.32
COL18A1P39060 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.82□□□□□ -1.32
COL18A1P39060 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC6.82□□□□□ -1.32
COL18A1P39060 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.82□□□□□ -1.32
COL18A1P39060 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 AC020910.2-201ENST00000603635 610 ntBASIC6.82□□□□□ -1.32
COL18A1P39060 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL18A1P39060 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms