Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RN7SKP253-201ENST00000516424 309 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA9P31269 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXA9P31269 NPM1P42-201ENST00000560329 862 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 MIR3691-201ENST00000578066 90 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 RBM22P1-201ENST00000578589 1214 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXA9P31269 AC095055.1-201ENST00000603472 1113 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 AL049539.1-201ENST00000611964 459 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA9P31269 AC131971.1-201ENST00000332881 1482 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
HOXA9P31269 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXA9P31269 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXA9P31269 OR55B1P-203ENST00000641518 2602 ntBASIC5.74□□□□□ -1.49
HOXA9P31269 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA9P31269 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXA9P31269 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA9P31269 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA9P31269 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
HOXA9P31269 AC023421.1-201ENST00000590535 1785 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA9P31269 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA9P31269 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA9P31269 SNORA17.1-201ENST00000362945 126 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXA9P31269 RNU1-149P-201ENST00000390870 161 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 DUTP5-201ENST00000406790 469 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXA9P31269 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXA9P31269 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXA9P31269 AC073850.1-201ENST00000449243 255 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 RPS18P6-201ENST00000476880 458 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXA9P31269 CDH12P4-201ENST00000517835 295 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 CDH12P3-201ENST00000517935 295 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 CDH12P1-201ENST00000518435 295 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 NMNAT1P5-201ENST00000559657 841 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 RPL10P14-201ENST00000565265 298 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 AP001357.1-201ENST00000586304 1053 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXA9P31269 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXA9P31269 AC090510.2-201ENST00000617465 629 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 AP002799.1-201ENST00000623552 423 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXA9P31269 AC000095.2-202ENST00000637415 154 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 AC112255.1-201ENST00000624070 2493 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXA9P31269 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXA9P31269 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
HOXA9P31269 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA9P31269 AL158152.1-201ENST00000602652 1435 ntBASIC5.73□□□□□ -1.49
HOXA9P31269 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXA9P31269 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA9P31269 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
HOXA9P31269 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA9P31269 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
HOXA9P31269 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA9P31269 ICE2P1-201ENST00000512800 1849 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA9P31269 RNU1-43P-201ENST00000365052 165 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA9P31269 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA9P31269 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA9P31269 RBMY2KP-201ENST00000418221 992 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.72□□□□□ -1.49
HOXA9P31269 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA9P31269 HSPE1P27-201ENST00000430808 296 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 GSTM5P1-201ENST00000434751 660 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 AL161722.1-201ENST00000446972 1032 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 AC015864.1-201ENST00000496512 544 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA9P31269 NPM1P21-201ENST00000513394 762 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA9P31269 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA9P31269 EIF4A2P5-201ENST00000529914 499 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.72□□□□□ -1.49
HOXA9P31269 AC137627.1-201ENST00000545761 289 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.72□□□□□ -1.49
HOXA9P31269 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXA9P31269 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA9P31269 AC005341.1-201ENST00000571086 708 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXA9P31269 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.72□□□□□ -1.49
HOXA9P31269 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.72□□□□□ -1.49
HOXA9P31269 AP001153.1-201ENST00000641024 338 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 LINC01739-205ENST00000641890 573 ntBASIC5.72□□□□□ -1.49
HOXA9P31269 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
HOXA9P31269 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
HOXA9P31269 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
HOXA9P31269 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA9P31269 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
HOXA9P31269 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA9P31269 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.72□□□□□ -1.49
HOXA9P31269 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXA9P31269 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
HOXA9P31269 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms