Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DYNC1H1-201ENST00000360184 14333 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.32□□□□□ -1.56
COL6A3P12111 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 RUNX1T1-250ENST00000614812 7483 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
COL6A3P12111 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.32□□□□□ -1.56
COL6A3P12111 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.32□□□□□ -1.56
COL6A3P12111 DIAPH2-201ENST00000324765 9333 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL6A3P12111 NEK1-207ENST00000511633 5536 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.32□□□□□ -1.56
COL6A3P12111 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
COL6A3P12111 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 RNU1-94P-201ENST00000362627 173 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 RNA5SP509-201ENST00000364577 119 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 AL162739.1-201ENST00000450606 307 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 AC108751.3-201ENST00000461814 1020 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 OR7E128P-201ENST00000532736 1024 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.32□□□□□ -1.56
COL6A3P12111 AC024589.2-201ENST00000605642 1294 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
COL6A3P12111 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.31□□□□□ -1.56
COL6A3P12111 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 ZNF43-202ENST00000357491 5249 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
COL6A3P12111 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC5.31□□□□□ -1.56
COL6A3P12111 BCOR-201ENST00000342274 6390 ntAPPRIS P3 TSL 5 BASIC5.31□□□□□ -1.56
COL6A3P12111 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 SNORA48.4-201ENST00000391089 134 ntBASIC5.31□□□□□ -1.56
COL6A3P12111 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.31□□□□□ -1.56
COL6A3P12111 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.31□□□□□ -1.56
COL6A3P12111 NRBF2P3-201ENST00000432731 865 ntBASIC5.31□□□□□ -1.56
COL6A3P12111 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC5.31□□□□□ -1.56
COL6A3P12111 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.31□□□□□ -1.56
COL6A3P12111 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.31□□□□□ -1.56
COL6A3P12111 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL6A3P12111 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
COL6A3P12111 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.31□□□□□ -1.56
COL6A3P12111 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC5.31□□□□□ -1.56
COL6A3P12111 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
COL6A3P12111 COL4A6-208ENST00000538570 6528 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 SEMA3E-201ENST00000307792 6476 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
COL6A3P12111 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.31□□□□□ -1.56
COL6A3P12111 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.31□□□□□ -1.56
COL6A3P12111 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.31□□□□□ -1.56
COL6A3P12111 RPS7P6-201ENST00000485777 579 ntBASIC5.31□□□□□ -1.56
COL6A3P12111 AC104971.1-201ENST00000495117 578 ntBASIC5.31□□□□□ -1.56
COL6A3P12111 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.31□□□□□ -1.56
COL6A3P12111 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC5.31□□□□□ -1.56
COL6A3P12111 AC025884.1-201ENST00000556034 378 ntBASIC5.31□□□□□ -1.56
COL6A3P12111 AC115286.1-201ENST00000604298 434 ntBASIC5.31□□□□□ -1.56
COL6A3P12111 MIR492-201ENST00000638676 116 ntBASIC5.31□□□□□ -1.56
COL6A3P12111 AC073869.8-201ENST00000641806 335 ntBASIC5.31□□□□□ -1.56
COL6A3P12111 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.31□□□□□ -1.56
COL6A3P12111 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 COL4A6-201ENST00000334504 6700 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL6A3P12111 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COL6A3P12111 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.31□□□□□ -1.56
COL6A3P12111 EGFR-201ENST00000275493 9821 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
COL6A3P12111 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.31□□□□□ -1.56
COL6A3P12111 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
COL6A3P12111 BRD7P6-201ENST00000431406 1860 ntBASIC5.31□□□□□ -1.56
COL6A3P12111 PLCXD2-205ENST00000636933 7710 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL6A3P12111 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.31□□□□□ -1.56
COL6A3P12111 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL6A3P12111 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.3□□□□□ -1.56
COL6A3P12111 MRPL49P2-201ENST00000521066 465 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 AP005131.7-201ENST00000610087 611 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 AC023043.4-201ENST00000612081 449 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 AC120338.1-201ENST00000625074 1541 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 SGMS1-AS1-201ENST00000443374 12400 ntTSL 4 BASIC5.3□□□□□ -1.56
COL6A3P12111 ITGA11-202ENST00000423218 10192 ntAPPRIS ALT1 TSL 2 BASIC5.3□□□□□ -1.56
COL6A3P12111 ITPK1-AS1-201ENST00000553639 4701 ntBASIC5.3□□□□□ -1.56
COL6A3P12111 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
COL6A3P12111 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL6A3P12111 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
COL6A3P12111 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
COL6A3P12111 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms