Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC013356.1-201ENST00000489027 564 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC090638.1-201ENST00000498296 909 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 KLHL8-208ENST00000512111 3245 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC068134.3-201ENST00000513620 788 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC091982.1-201ENST00000518134 520 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC091939.1-201ENST00000522704 691 ntTSL 3 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC022882.1-201ENST00000532142 501 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 MIR548AI-201ENST00000579940 88 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AL358394.3-202ENST00000599308 832 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC011626.1-201ENST00000604710 562 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 RNU6-87P-201ENST00000607561 108 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AC093635.1-201ENST00000609028 555 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 AL354950.2-201ENST00000617939 290 ntBASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 LINC01002-216ENST00000632351 572 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 CCNT1-206ENST00000640148 596 ntTSL 5 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 HCP5-201ENST00000414046 2658 ntTSL 4 BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
VPS9D1Q9Y2B5 LINC00920-201ENST00000499966 2147 ntTSL 2 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 LRRC37A9P-201ENST00000603850 5376 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 BRCA1-208ENST00000468300 3273 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 MTND5P28-201ENST00000438005 1594 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 ZNF670-ZNF695-202ENST00000474541 2751 ntAPPRIS ALT2 TSL 2 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 OR1K1-201ENST00000277309 951 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 Y_RNA.5-201ENST00000362334 102 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 Y_RNA.153-201ENST00000363615 91 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 Y_RNA.455-201ENST00000384230 98 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 FCAR-205ENST00000391723 754 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 RN7SKP121-201ENST00000410842 305 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC008155.1-201ENST00000421078 329 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 RPL31P12-201ENST00000422587 358 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC012506.4-202ENST00000430051 572 ntTSL 5 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 PRPF38AP2-201ENST00000438179 851 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC091808.1-201ENST00000438867 786 ntTSL 3 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AL136380.1-201ENST00000447970 162 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 LINC00265-202ENST00000448955 468 ntTSL 2 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC107399.1-201ENST00000451226 265 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 LINC00652-202ENST00000454749 963 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC233702.1-201ENST00000482905 502 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 KLF7P1-201ENST00000490941 1048 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 RPL23AP66-201ENST00000494341 479 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC106872.3-201ENST00000495104 446 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC112203.1-201ENST00000506315 1020 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 RN7SKP197-201ENST00000517077 297 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC008708.2-201ENST00000522956 1124 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC123788.1-201ENST00000526922 783 ntTSL 3 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 LINC00678-201ENST00000527083 786 ntTSL 3 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AP003181.2-201ENST00000528941 181 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 RAB30-209ENST00000532548 644 ntTSL 3 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 CASP1-216ENST00000534497 825 ntTSL 5 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 HMGB1P6-201ENST00000569046 646 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 SRP68P1-201ENST00000584247 269 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC005758.1-201ENST00000586408 625 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC005262.1-201ENST00000588562 362 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC004805.2-201ENST00000605382 482 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AC091903.1-201ENST00000624322 454 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 OR7A2P-202ENST00000641312 1219 ntBASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 CFAP58-202ENST00000369704 3313 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.1
VPS9D1Q9Y2B5 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC8.15□□□□□ -1.11
VPS9D1Q9Y2B5 KCNMA1-214ENST00000434208 4055 ntAPPRIS ALT2 TSL 5 BASIC8.15□□□□□ -1.11
VPS9D1Q9Y2B5 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC8.15□□□□□ -1.11
VPS9D1Q9Y2B5 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC8.15□□□□□ -1.11
VPS9D1Q9Y2B5 LBR-201ENST00000272163 3745 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
VPS9D1Q9Y2B5 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.11
VPS9D1Q9Y2B5 BMX-202ENST00000348343 2531 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 ZNF812P-201ENST00000457674 1694 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AL136146.1-201ENST00000529830 1667 ntBASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 SAG-201ENST00000409110 1591 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 DNAH9-215ENST00000608377 3147 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 AC018682.1-201ENST00000506009 1519 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
VPS9D1Q9Y2B5 NGDN-201ENST00000397154 2204 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms