Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC007563.3-201ENST00000433233 371 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 CACYBPP1-201ENST00000438592 684 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AC243772.1-201ENST00000451620 410 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 LRRC37A14P-201ENST00000452297 462 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 PPIAP19-201ENST00000486414 492 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 BTG4P1-201ENST00000510421 183 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AC006499.4-201ENST00000510947 694 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 RNU6-491P-201ENST00000516099 110 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 TMEM97P2-201ENST00000517841 403 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 HMGB1P42-201ENST00000532126 553 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AC074029.2-201ENST00000551045 634 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AC126615.2-201ENST00000553003 515 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 GARSP1-201ENST00000570895 719 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AC127024.6-201ENST00000621598 424 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AC093671.1-201ENST00000624981 2929 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AC009229.4-201ENST00000623854 1947 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 MAPK10-338ENST00000641647 3362 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AC244453.4-201ENST00000419150 388 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 MTND6P12-201ENST00000428247 522 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AL389925.1-201ENST00000432257 728 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 CASP3P1-201ENST00000446037 609 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 OSTCP1-201ENST00000455507 450 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AC114781.3-201ENST00000512083 142 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AC034244.2-201ENST00000514668 858 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 CYCSP22-201ENST00000517555 339 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 CASP1-216ENST00000534497 825 ntTSL 5 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AC244502.2-201ENST00000543361 851 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 MRO-208ENST00000588444 866 ntTSL 3 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 UQCRC2P1-201ENST00000417777 1332 ntBASIC7.51□□□□□ -1.21
CHMP4AQ9BY43 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 FIGN-202ENST00000409634 746 ntTSL 5 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 RNU2-50P-201ENST00000410494 143 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 RN7SKP29-201ENST00000410957 272 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AL354890.1-201ENST00000413730 346 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 RNF19BPX-201ENST00000426224 625 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 VN1R21P-201ENST00000426703 765 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AC104843.2-201ENST00000427666 297 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 H3F3BP1-201ENST00000440551 403 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 RPS27AP2-201ENST00000457576 465 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 RPL12P24-201ENST00000474907 486 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 RN7SL570P-201ENST00000484405 292 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 TRBV5-2-201ENST00000489095 273 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 RPL7P51-201ENST00000490532 749 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 PCNAP1-201ENST00000505363 709 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 MIR2117-201ENST00000516780 80 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 AC104997.1-201ENST00000519761 717 ntBASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC7.5□□□□□ -1.21
CHMP4AQ9BY43 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms