Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
IFT140Q96RY7 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 AC092070.2-203ENST00000598377 3644 ntBASIC8.76□□□□□ -1.01
IFT140Q96RY7 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
IFT140Q96RY7 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
IFT140Q96RY7 AC011504.1-201ENST00000623331 4103 ntBASIC8.76□□□□□ -1.01
IFT140Q96RY7 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
IFT140Q96RY7 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
IFT140Q96RY7 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
IFT140Q96RY7 RNA5-8SP7-201ENST00000363443 155 ntBASIC8.76□□□□□ -1.01
IFT140Q96RY7 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 AC021106.1-201ENST00000509020 1058 ntBASIC8.76□□□□□ -1.01
IFT140Q96RY7 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 AC008814.1-201ENST00000603797 406 ntBASIC8.76□□□□□ -1.01
IFT140Q96RY7 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC8.76□□□□□ -1.01
IFT140Q96RY7 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
IFT140Q96RY7 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
IFT140Q96RY7 CAST-222ENST00000508579 1758 ntTSL 2 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC8.75□□□□□ -1.01
IFT140Q96RY7 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
IFT140Q96RY7 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
IFT140Q96RY7 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
IFT140Q96RY7 KYNUP3-201ENST00000574386 1341 ntBASIC8.75□□□□□ -1.01
IFT140Q96RY7 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
IFT140Q96RY7 AC006511.3-201ENST00000624929 1783 ntBASIC8.75□□□□□ -1.01
IFT140Q96RY7 AC006206.1-201ENST00000544842 3387 ntBASIC8.75□□□□□ -1.01
IFT140Q96RY7 SNORD1C-201ENST00000363315 78 ntBASIC8.75□□□□□ -1.01
IFT140Q96RY7 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 EIF2S2P2-201ENST00000447161 982 ntBASIC8.75□□□□□ -1.01
IFT140Q96RY7 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
IFT140Q96RY7 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
IFT140Q96RY7 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
IFT140Q96RY7 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
IFT140Q96RY7 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
IFT140Q96RY7 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC8.74□□□□□ -1.01
IFT140Q96RY7 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC8.74□□□□□ -1.01
IFT140Q96RY7 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 RN7SKP114-201ENST00000410327 279 ntBASIC8.74□□□□□ -1.01
IFT140Q96RY7 ELOCP19-201ENST00000411919 318 ntBASIC8.74□□□□□ -1.01
IFT140Q96RY7 KCTD10P1-201ENST00000434203 625 ntBASIC8.74□□□□□ -1.01
IFT140Q96RY7 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC8.74□□□□□ -1.01
IFT140Q96RY7 AC012400.1-201ENST00000518452 381 ntBASIC8.74□□□□□ -1.01
IFT140Q96RY7 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC8.74□□□□□ -1.01
IFT140Q96RY7 RGS5-219ENST00000528019 512 ntTSL 4 BASIC8.74□□□□□ -1.01
IFT140Q96RY7 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 OR4F13P-202ENST00000560066 2054 ntBASIC8.74□□□□□ -1.01
IFT140Q96RY7 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
IFT140Q96RY7 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
IFT140Q96RY7 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
IFT140Q96RY7 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
IFT140Q96RY7 HMGB3P7-201ENST00000400214 611 ntBASIC8.73□□□□□ -1.01
IFT140Q96RY7 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
IFT140Q96RY7 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 AL365220.1-201ENST00000432923 399 ntBASIC8.73□□□□□ -1.01
IFT140Q96RY7 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
IFT140Q96RY7 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 AC122688.1-201ENST00000541494 223 ntBASIC8.73□□□□□ -1.01
IFT140Q96RY7 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 AL133481.2-203ENST00000607558 139 ntBASIC8.73□□□□□ -1.01
IFT140Q96RY7 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
IFT140Q96RY7 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
IFT140Q96RY7 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.01
IFT140Q96RY7 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
IFT140Q96RY7 CASC19-260ENST00000641828 2001 ntBASIC8.72□□□□□ -1.01
IFT140Q96RY7 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms