Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC42Q96M95 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC42Q96M95 AL353796.1-201ENST00000561542 3241 ntBASIC5.8□□□□□ -1.48
CCDC42Q96M95 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC42Q96M95 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC42Q96M95 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 AC110602.1-201ENST00000437414 318 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 AC245028.2-201ENST00000458673 253 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 AC093827.1-201ENST00000480094 861 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 RPL15P21-201ENST00000495592 567 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 AC060775.1-201ENST00000518241 520 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 AC011853.1-201ENST00000518911 454 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 GTF2IP11-201ENST00000526931 420 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC42Q96M95 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 AP001496.3-201ENST00000580230 913 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 PPATP2-201ENST00000605635 508 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 FAM72A-208ENST00000607379 1139 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 AC114786.1-201ENST00000512892 1415 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.79□□□□□ -1.48
CCDC42Q96M95 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC42Q96M95 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
CCDC42Q96M95 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC42Q96M95 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC42Q96M95 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 IFIT1P1-201ENST00000400497 1449 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 LRRC37A14P-201ENST00000452297 462 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 AC021660.1-201ENST00000465006 554 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 COX6B1P2-201ENST00000489624 230 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 SNORA43.3-201ENST00000517240 103 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 AC100784.1-201ENST00000522790 310 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 RN7SL356P-201ENST00000582228 248 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 MIR6839-201ENST00000620425 113 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 FO681491.1-202ENST00000623392 737 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.78□□□□□ -1.48
CCDC42Q96M95 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC42Q96M95 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC42Q96M95 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AC008079.2-201ENST00000623543 20396 ntBASIC5.77□□□□□ -1.49
CCDC42Q96M95 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 RN7SKP153-201ENST00000365026 316 ntBASIC5.77□□□□□ -1.49
CCDC42Q96M95 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AC066692.1-201ENST00000421721 457 ntBASIC5.77□□□□□ -1.49
CCDC42Q96M95 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AL133173.1-201ENST00000423458 397 ntBASIC5.77□□□□□ -1.49
CCDC42Q96M95 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 RN7SKP183-201ENST00000517169 324 ntBASIC5.77□□□□□ -1.49
CCDC42Q96M95 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC42Q96M95 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC42Q96M95 AC012616.1-201ENST00000600294 197 ntBASIC5.77□□□□□ -1.49
CCDC42Q96M95 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms