Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC005242.1-201ENST00000585658 438 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXA1P49639 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXA1P49639 AL050303.3-201ENST00000613704 284 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 MIR6070-201ENST00000613967 103 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 MIR6883-201ENST00000614952 78 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AC245389.2-201ENST00000616023 576 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AC242843.1-201ENST00000618702 573 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 AL445528.2-201ENST00000620582 470 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 CLUHP10-201ENST00000631979 980 ntBASIC4.9□□□□□ -1.63
HOXA1P49639 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXA1P49639 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
HOXA1P49639 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXA1P49639 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXA1P49639 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC4.9□□□□□ -1.63
HOXA1P49639 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 FGG-205ENST00000407946 1636 ntTSL 5 BASIC4.9□□□□□ -1.63
HOXA1P49639 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
HOXA1P49639 AL731566.1-201ENST00000620490 1937 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 FANCD2P2-201ENST00000437591 1400 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AL158152.1-201ENST00000602652 1435 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
HOXA1P49639 AL138820.1-201ENST00000617901 5305 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 RNA5SP375-201ENST00000362975 119 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 RNA5SP485-201ENST00000365053 119 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 RN7SKP292-201ENST00000365522 317 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 MIR122-201ENST00000385044 85 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 MIR431-201ENST00000385266 114 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 RN7SKP144-201ENST00000411108 279 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.89□□□□□ -1.63
HOXA1P49639 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC112492.2-201ENST00000432774 1030 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 PTP4A1P3-201ENST00000433661 420 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 GAPDHP37-201ENST00000442317 968 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.89□□□□□ -1.63
HOXA1P49639 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.89□□□□□ -1.63
HOXA1P49639 COX4I1P2-201ENST00000447446 547 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 BUD31P2-201ENST00000449374 300 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.89□□□□□ -1.63
HOXA1P49639 RPL23AP60-201ENST00000450011 454 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 RPL36AP55-201ENST00000454114 305 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC104629.2-201ENST00000468627 598 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 GM2AP2-201ENST00000491764 562 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 SNX18P24-201ENST00000505249 671 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 OR4D12P-201ENST00000509361 911 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXA1P49639 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXA1P49639 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 CYCSP25-201ENST00000525280 316 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC004923.2-201ENST00000529649 369 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AP001858.2-201ENST00000536213 601 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 CD24P2-201ENST00000565486 219 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXA1P49639 MIR378H-201ENST00000579966 83 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC006116.7-201ENST00000590141 756 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC036176.3-201ENST00000602456 418 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AL390877.1-201ENST00000605704 214 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AC015922.4-201ENST00000612568 690 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 MIR6503-201ENST00000622884 86 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AP000943.4-201ENST00000622912 357 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 AP003485.1-201ENST00000625093 753 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 FRG1EP-201ENST00000634469 770 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HOXA1P49639 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.89□□□□□ -1.63
HOXA1P49639 AC000123.3-201ENST00000624029 4975 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 AL360270.2-201ENST00000562952 5985 ntBASIC4.89□□□□□ -1.63
HOXA1P49639 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXA1P49639 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms