Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.45□□□□□ -1.38
BRCA1P38398 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.45□□□□□ -1.38
BRCA1P38398 RSU1P1-201ENST00000453416 441 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC6.45□□□□□ -1.38
BRCA1P38398 MIR4284-201ENST00000578924 81 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.45□□□□□ -1.38
BRCA1P38398 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
BRCA1P38398 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
BRCA1P38398 WBP11P1-201ENST00000562560 1931 ntBASIC6.45□□□□□ -1.38
BRCA1P38398 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
BRCA1P38398 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 AC114774.1-201ENST00000507410 1770 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.44□□□□□ -1.38
BRCA1P38398 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.44□□□□□ -1.38
BRCA1P38398 AC007114.2-201ENST00000576014 4281 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.44□□□□□ -1.38
BRCA1P38398 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.44□□□□□ -1.38
BRCA1P38398 CYP4F29P-201ENST00000420685 446 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.44□□□□□ -1.38
BRCA1P38398 AC007559.1-201ENST00000428736 355 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 AL354714.3-201ENST00000447284 493 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 AC013356.1-201ENST00000489027 564 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.44□□□□□ -1.38
BRCA1P38398 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.44□□□□□ -1.38
BRCA1P38398 AC005252.1-201ENST00000604518 1063 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 AL133481.2-203ENST00000607558 139 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 CR381572.2-201ENST00000624852 397 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
BRCA1P38398 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 OR4F13P-202ENST00000560066 2054 ntBASIC6.44□□□□□ -1.38
BRCA1P38398 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
BRCA1P38398 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC6.44□□□□□ -1.38
BRCA1P38398 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.44□□□□□ -1.38
BRCA1P38398 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
BRCA1P38398 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.44□□□□□ -1.38
BRCA1P38398 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
BRCA1P38398 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.43□□□□□ -1.38
BRCA1P38398 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
BRCA1P38398 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
BRCA1P38398 SNORD8-201ENST00000363915 110 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
BRCA1P38398 OR7E125P-201ENST00000443450 846 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.43□□□□□ -1.38
BRCA1P38398 AC079080.1-201ENST00000479841 822 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC6.43□□□□□ -1.38
BRCA1P38398 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC6.43□□□□□ -1.38
BRCA1P38398 AC105129.1-201ENST00000560250 297 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 BGLT3-201ENST00000564523 994 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 AL353729.2-201ENST00000605859 1249 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 AC091932.2-201ENST00000623014 291 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
BRCA1P38398 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.43□□□□□ -1.38
BRCA1P38398 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
BRCA1P38398 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
BRCA1P38398 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.43□□□□□ -1.38
BRCA1P38398 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
BRCA1P38398 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
BRCA1P38398 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
BRCA1P38398 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
BRCA1P38398 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
BRCA1P38398 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.43□□□□□ -1.38
BRCA1P38398 RPS3AP23-201ENST00000401762 784 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 RNU4-25P-201ENST00000410569 230 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 RIMKLBP2-201ENST00000424737 654 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.43□□□□□ -1.38
BRCA1P38398 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.43□□□□□ -1.38
BRCA1P38398 AC006967.1-201ENST00000467608 589 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
BRCA1P38398 MIR4301-201ENST00000577203 66 ntBASIC6.43□□□□□ -1.38
BRCA1P38398 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.43□□□□□ -1.38
BRCA1P38398 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 AC068870.1-201ENST00000563737 2455 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
BRCA1P38398 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.42□□□□□ -1.38
BRCA1P38398 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.42□□□□□ -1.38
BRCA1P38398 DOCK11P1-201ENST00000553480 5932 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC6.42□□□□□ -1.38
BRCA1P38398 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.42□□□□□ -1.38
BRCA1P38398 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.42□□□□□ -1.38
BRCA1P38398 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.42□□□□□ -1.38
BRCA1P38398 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.42□□□□□ -1.38
BRCA1P38398 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 TRIM60P11Y-201ENST00000445313 801 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 CT45A11P-201ENST00000448043 1134 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms