Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 AC069234.4-201ENST00000621276 412 ntBASIC6□□□□□ -1.45
MSX2P35548 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
MSX2P35548 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6□□□□□ -1.45
MSX2P35548 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6□□□□□ -1.45
MSX2P35548 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6□□□□□ -1.45
MSX2P35548 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
MSX2P35548 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
MSX2P35548 AC119674.1-202ENST00000641333 1860 ntBASIC6□□□□□ -1.45
MSX2P35548 DDX18P6-201ENST00000450119 1997 ntBASIC6□□□□□ -1.45
MSX2P35548 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
MSX2P35548 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
MSX2P35548 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
MSX2P35548 ZNF542P-204ENST00000482727 1305 ntBASIC5.99□□□□□ -1.45
MSX2P35548 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 MTND5P11-201ENST00000511037 1812 ntBASIC5.99□□□□□ -1.45
MSX2P35548 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 AC138907.8-201ENST00000623981 2256 ntBASIC5.99□□□□□ -1.45
MSX2P35548 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
MSX2P35548 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 Y_RNA.194-201ENST00000363985 102 ntBASIC5.99□□□□□ -1.45
MSX2P35548 Y_RNA.472-201ENST00000384322 102 ntBASIC5.99□□□□□ -1.45
MSX2P35548 RNU5A-2P-201ENST00000384337 116 ntBASIC5.99□□□□□ -1.45
MSX2P35548 MIR99A-201ENST00000384906 81 ntBASIC5.99□□□□□ -1.45
MSX2P35548 RNA5SP35-201ENST00000391257 129 ntBASIC5.99□□□□□ -1.45
MSX2P35548 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 AC008173.1-201ENST00000418901 264 ntBASIC5.99□□□□□ -1.45
MSX2P35548 PTP4A1P5-201ENST00000420305 455 ntBASIC5.99□□□□□ -1.45
MSX2P35548 GPN3P1-201ENST00000423883 535 ntBASIC5.99□□□□□ -1.45
MSX2P35548 FDPSP6-201ENST00000425091 512 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 NAP1L4P2-201ENST00000425958 899 ntBASIC5.99□□□□□ -1.45
MSX2P35548 CENPN-204ENST00000428963 971 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 RPL6P30-201ENST00000443382 862 ntBASIC5.99□□□□□ -1.45
MSX2P35548 GAPDHP20-201ENST00000444107 1007 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 RAB28P3-201ENST00000448325 597 ntBASIC5.99□□□□□ -1.45
MSX2P35548 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.99□□□□□ -1.45
MSX2P35548 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.99□□□□□ -1.45
MSX2P35548 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 RN7SL492P-201ENST00000460700 295 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AC073594.1-201ENST00000462065 364 ntBASIC5.99□□□□□ -1.45
MSX2P35548 UOX-201ENST00000471089 899 ntBASIC5.99□□□□□ -1.45
MSX2P35548 MTND3P7-201ENST00000474435 343 ntBASIC5.99□□□□□ -1.45
MSX2P35548 OR9A1P-202ENST00000484361 945 ntBASIC5.99□□□□□ -1.45
MSX2P35548 RPL9P15-201ENST00000491096 532 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC5.99□□□□□ -1.45
MSX2P35548 AC073648.3-201ENST00000504939 925 ntBASIC5.99□□□□□ -1.45
MSX2P35548 XKRY-201ENST00000510392 1100 ntBASIC5.99□□□□□ -1.45
MSX2P35548 MTCO2P32-201ENST00000514865 403 ntBASIC5.99□□□□□ -1.45
MSX2P35548 SCARNA5-201ENST00000516201 276 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC5.99□□□□□ -1.45
MSX2P35548 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX2P35548 IGHVII-49-1-201ENST00000521760 224 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC5.99□□□□□ -1.45
MSX2P35548 ZDHHC20P3-201ENST00000531576 336 ntBASIC5.99□□□□□ -1.45
MSX2P35548 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 AC087897.1-201ENST00000550134 156 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC5.99□□□□□ -1.45
MSX2P35548 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC5.99□□□□□ -1.45
MSX2P35548 AL354943.1-201ENST00000572103 781 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC5.99□□□□□ -1.45
MSX2P35548 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.99□□□□□ -1.45
MSX2P35548 AC090241.1-201ENST00000587732 621 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AL589765.6-201ENST00000601909 549 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AC091133.5-201ENST00000603088 301 ntBASIC5.99□□□□□ -1.45
MSX2P35548 NTAN1P1-201ENST00000603150 646 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AC095055.1-201ENST00000603472 1113 ntBASIC5.99□□□□□ -1.45
MSX2P35548 MTND3P19-201ENST00000603825 345 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AL021707.7-201ENST00000607991 416 ntBASIC5.99□□□□□ -1.45
MSX2P35548 AL450489.1-201ENST00000612071 468 ntBASIC5.99□□□□□ -1.45
MSX2P35548 IGKV2OR2-10-201ENST00000613976 311 ntBASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms