Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
UBE2D4Q9Y2X8 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 GALNS-213ENST00000569433 723 ntTSL 3 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC13.65□□□□□ -0.22
UBE2D4Q9Y2X8 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 AC016405.3-201ENST00000607710 860 ntBASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 AC005837.3-201ENST00000612163 286 ntBASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 SP2-202ENST00000613139 908 ntTSL 5 BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 AC010536.3-201ENST00000620306 533 ntBASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
UBE2D4Q9Y2X8 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 CROCCP3-202ENST00000420820 1947 ntBASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 MCRIP2P1-201ENST00000394346 511 ntBASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
UBE2D4Q9Y2X8 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms